Sequence of DPV Sugarcane mosaic virus

Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN3

ACC No: FM997890

Dated: 2010-05-19 | Length: 1815 | CRC: 1461054434

                
ID   FM997890; SV 1; linear; genomic RNA; STD; VRL; 1815 BP.
XX
AC   FM997890;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN3
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1815
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1815
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Saccharum officinarum cv. Badila"
FT                   /isolate="YN3"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Honghe"
FT                   /db_xref="taxon:12224"
FT   CDS             <1. .1584
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /protein_id="CAX36839.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSSGIQDNEIDNCCKMFANG
FT                   DDLLLAVHPDYEHILDGFQTHFGNLGLNFEFNSRTREKSNLWFMSTQGLKCEGIYIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYSDLIHEIRKFYAWLLEMQPFANLAK
FT                   EGLAPYIAETALRNLYLGSGIKGEEIEKYFRQFAKDLPGYLEDYNEEVFHQAGTVDAGA
FT                   QGGGGNAGTQPPTTGAAAQGGAQPPATGAAAQPPATQGSQPPTGGATGGGGVQTGTGGT
FT                   GSVTGGQRDKDVDAGTTGKITVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDIS
FT                   NTRATREEFDRWYEAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGSWTMMDGDEQ
FT                   RVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYA
FT                   FDFYEMNSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNM
FT                   HSLLGVQQHH"
FT   mat_peptide     <1. .642
FT                   /product="NIb polymerase"
FT   mat_peptide     643. .1581
FT                   /product="Coat protein"
FT   3'UTR           1585. .1815
XX
SQ   Sequence 1815 BP; 574 A; 374 C; 450 G; 417 T; 0 other;

fm997890 Length: 1815  19-MAY-2010  Type: N  Check: 6985  ..

       1  gggaacaaca gtgggcaacc atcaactgta gttgacaata cgctaatggt
      51  catcttagca ttcaattatg cgatgttgtc aagtggaata caagacaatg
     101  aaatcgacaa ctgttgcaaa atgtttgcta atggggatga tctactgttg
     151  gcagtacatc ccgattacga acatatactg gatggctttc agactcactt
     201  tggaaacctt ggtttaaatt ttgaattcaa ttcacgaacg agggaaaaat
     251  cgaacttgtg gttcatgtca acgcaagggc tcaagtgtga gggcatttat
     301  ataccaaaac tcgaaaagga acgaatagtc gccatactcg agtgggatcg
     351  ctcaaatcta cccgagcacc gtctagaagc catctgtgca gcaatggttg
     401  aagcgtgggg ctattcagat ctcatacatg aaattcggaa attttatgca
     451  tggcttttgg aaatgcaacc atttgcaaat ctagccaaag agggcctagc
     501  tccatatatt gcagaaacag cgcttcgtaa cttgtatcta ggttcaggga
     551  ttaagggaga ggaaatcgaa aaatacttca ggcagtttgc aaaggacctc
     601  cctgggtatc tagaggatta caacgaagaa gttttccacc aagctggaac
     651  agtcgatgca ggtgctcaag gaggaggcgg aaacgccgga actcaaccgc
     701  caaccactgg agcagcagct caaggaggag ctcaaccacc agcaactgga
     751  gcagccgcgc aaccacctgc aactcaaggt tcacaaccgc ccacaggggg
     801  agctactggt ggaggtggtg tacaaacagg aactggtgga actggctcag
     851  tcacaggagg ccaaagagac aaggatgtag atgctggtac aacaggtaaa
     901  atcacagtgc caaaacttaa agccatgtcg aagaagatgc gcttgccaaa
     951  agcaaaagga aaagatgttt tacatttgga ctttctgtta acatacaaac
    1001  cgcaacaaca agacatatca aacacaagag caaccagaga ggagtttgat
    1051  agatggtatg aagccataaa gaaggaatat gaaatagatg acacacaaat
    1101  gacagttgtc atgagtggtc taatggtatg gtgtattgag aatggttgct
    1151  caccaaacat aaacggaagt tggacaatga tggatggaga tgaacaaaga
    1201  gtcttcccat tgaagccagt tattgaaaac gcatctccaa catttcggca
    1251  aataatgcat catttcagtg atgcagctga agcatatatc gagtatagaa
    1301  actctacaga gcgatacatg ccacgatatg gacttcagcg aaatctcacc
    1351  gactatagct tagcgcggta tgcatttgac ttttatgaaa tgaattcaag
    1401  gacaccagct agagctaagg aagcccacat gcagatgaag gccgcagcag
    1451  ttcgtggttc aaacacacga ctgtttggtc tggacggaaa tgtcggcgag
    1501  acccaggaga atacagagag acacacagct ggcgatgtta gtcgcaatat
    1551  gcactctctg ttgggagtgc agcaacacca ctagtctcct ggaaaccctg
    1601  tttgcagtac ctatagtatg tactaataat gtatgtcagt gaggttttac
    1651  ctcgtcttca ctatattacg tatgtactta aagcgtgaac cagtctgcag
    1701  gacaaagggt tggacccagt gtcttctggt gtagcgtgta ctagcgtcga
    1751  gccacgtgac agacagcact gggtgtggct ttgccattag tgttgcgagt
    1801  ctcttggtga gagac