Sequence of DPV Sugarcane mosaic virus

Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN6

ACC No: FM997893

Dated: 2010-05-19 | Length: 1794 | CRC: 555246876

                
ID   FM997893; SV 1; linear; genomic RNA; STD; VRL; 1794 BP.
XX
AC   FM997893;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN6
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1794
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1794
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Saccharum officinarum cv. Badila"
FT                   /isolate="YN6"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Menghai"
FT                   /db_xref="taxon:12224"
FT   CDS             <1. .1560
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /protein_id="CAX36842.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSSGIREDEIDNCCKMFANG
FT                   DDLLLAVHPDFEYILDGFQTHFSNLGLNFDFTSRTKEKSDLWFMSTRGMKCENIHIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFANLAK
FT                   DGLAPYIAETALRNLYIGAGIKEEEIEKYYKQFAKDLPGYLEDYNEDVVHQAGTVDAGA
FT                   TGGTPPASGVTAPASGTPPATGAVAPATGATQPASGGNPPSTSPGTGAQADANSANAQK
FT                   DKDVDAGTTGTLSVPKLKAMSKKMRLPKAKGSDILHLDFLLKYKPQQQDISNTRATREE
FT                   FDRWYEAIQREYEINETQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQRVFPLKPV
FT                   IENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTS
FT                   RTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQGNTERHTAGDVSRNMRSLLGVQQ
FT                   HH"
FT   mat_peptide     <1. .642
FT                   /product="NIb polymerase"
FT   mat_peptide     643. .1557
FT                   /product="Coat protein"
FT   3'UTR           1561. .1794
XX
SQ   Sequence 1794 BP; 564 A; 375 C; 435 G; 420 T; 0 other;

fm997893 Length: 1794  19-MAY-2010  Type: N  Check: 1857  ..

       1  gggaacaata gtgggcagcc atcaacagtt gtagataaca cgctaatggt
      51  gatcttagct ttcaactatg ccatgctgtc aagtgggatt cgagaagatg
     101  aaatcgataa ctgttgcaag atgttcgcaa atggcgatga cttactattg
     151  gcagtgcacc ctgattttga gtacatccta gatgggtttc aaactcattt
     201  cagtaacctc ggtttgaact tcgattttac atctcgaacg aaggaaaaat
     251  ccgatttatg gtttatgtca acgagaggaa tgaagtgcga gaacattcac
     301  atacctaaac tcgagaagga gcgtatagtt gccatattgg aatgggatcg
     351  atcaaatcta ccagaacatc gacttgaagc aatttgtgca gctatggtag
     401  aggcatgggg ttatccagat ctcattcatg aaattcggaa attttatgcg
     451  tggcttctgg aaatgcaacc ctttgccaat ctagcaaagg atggtttagc
     501  tccatacatc gcagaaacag ctttacgaaa tttgtacatt ggagcaggta
     551  taaaggaaga ggagatcgag aagtactaca agcagtttgc aaaggatttg
     601  ccaggatact tagaagacta caacgaagat gttgttcatc aggcaggcac
     651  tgtcgacgct ggcgcaacgg gaggaacacc tccagcaagc ggtgtgacag
     701  cacccgcaag cggaacacca ccagcaactg gagcagtagc accagccaca
     751  ggagctacac aacctgcttc agggggaaac cctccatcga ctagtccagg
     801  aaccggagca caagctgatg caaattcagc aaacgcacaa aaagataaag
     851  atgtggatgc tggcacaaca ggaacgttgt cagtacctaa gctcaaagcc
     901  atgtcaaaga aaatgcgact acccaaggca aagggtagtg atattttgca
     951  cttggatttc ttacttaaat acaaaccaca acaacaagat atatcgaaca
    1001  caagagcaac cagagaagag ttcgatagat ggtatgaggc catacaaaga
    1051  gagtatgaaa ttaatgagac acaaatgaag atcattatga gtggtctaat
    1101  ggtatggtgc attgaaaacg gttgctcacc aaacataaac ggaagttgga
    1151  ccatgatgga tggggacgaa caaagggtct tccccttgaa accagttatt
    1201  gagaatgcat caccaacatt tcggcaaata atgcatcact tcagtgatgc
    1251  tgctgaagcg tatattgaat acagaaactc aactgagaga tatatgccaa
    1301  gatacggact tcagcgaaat ctcaccgact atagcctagc acggtatgct
    1351  ttcgattttt acgaaatgac atcacgcaca ccagctagag ctaaagaagc
    1401  ccacatgcag atgaaagccg cagcagttcg tggttcaaac actcgactgt
    1451  tcggtctgga cggaaatgtc ggcgagactc aggggaatac agagagacac
    1501  acagctggcg acgttagtcg caatatgcgc tctctgttgg gagtgcagca
    1551  gcaccattaa tctcctggaa accctgtttg cagtacctat agtatgttct
    1601  gtgtactagt ataagagtga ggctctgcct cgtttctact tttactattt
    1651  atgtactata agtgtgaacc agtctgcaag acacagggtt ggactcagtg
    1701  tcttctggtg taacacgtac tagcgtcgag ccatgttacg gacggcactg
    1751  ggaatggcgt tgccatgtgt gctgcgagtc tcatggtaag agac