Sequence of DPV Sugarcane mosaic virus

Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN7

ACC No: FM997894

Dated: 2010-05-19 | Length: 1819 | CRC: 321264108

                
ID   FM997894; SV 1; linear; genomic RNA; STD; VRL; 1819 BP.
XX
AC   FM997894;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN7
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1819
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1819
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Saccharum officinarum cv. Luohanzhe"
FT                   /isolate="YN7"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Nanjian"
FT                   /db_xref="taxon:12224"
FT   CDS             <1. .1584
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /protein_id="CAX36843.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSSGIREDEIDNCCRMFANG
FT                   DDLLLAVHPDFEYILDGFQNHFSSLGLNFDFTSRTREKSDLWFMSTRGIKCENIYIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFANLAK
FT                   DGLAPYIAETALRNLYIGAGIKEEEIEKYYKQFAKDLPGYLEDYNEDVVHQAGTVDAGA
FT                   TGGSATGSGGSPPASGVTAPAASGTPPATGAAATVTGSAQPASGGSPPSTGSGTGAQAD
FT                   ANSANTQKDKDVDAGTTGALSVPKLKAMSKKMRLPKAKGSDILHLDFLLKYKPQQQDIS
FT                   NTRATREEFDRWYEAIQREYEINETQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQ
FT                   RVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYA
FT                   FDFYEMTSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNM
FT                   HSLLGVQQHH"
FT   mat_peptide     <1. .642
FT                   /product="NIb polymerase"
FT   mat_peptide     643. .1581
FT                   /product="Coat protein"
FT   3'UTR           1585. .1819
XX
SQ   Sequence 1819 BP; 569 A; 377 C; 440 G; 433 T; 0 other;

fm997894 Length: 1819  19-MAY-2010  Type: N  Check: 8845  ..

       1  gggaataata gcggacagcc atcaacagtt gtcgataata cactaatggt
      51  gatcttagct tttaactatg ccatgctgtc aagtggaatt cgagaagacg
     101  aaattgataa ctgttgtaga atgtttgcaa acggcgatga tttactctta
     151  gcagtgcacc ctgactttga atacatctta gatggatttc aaaatcactt
     201  cagtagcctc ggtttaaact tcgatttcac atctcgaaca agggaaaaat
     251  ctgacttatg gtttatgtca acgagaggaa taaagtgcga aaacatttat
     301  atacctaaac ttgagaagga gcgtatagtt gccatactag aatgggatcg
     351  atcaaaccta ccagaacatc gactcgaagc tatttgtgca gcaatggtag
     401  aggcatgggg ctatccagat cttatccatg aaattcggaa attttatgca
     451  tggcttctag aaatgcaacc cttcgccaat ctggcaaagg atggtttggc
     501  cccatatatt gcagagacag ctctacgcaa tttgtatatt ggagcaggca
     551  taaaggaaga ggaaatcgaa aaatactaca agcagtttgc aaaagatcta
     601  ccaggatact tagaagatta caacgaagat gtagttcatc aggcaggcac
     651  tgttgacgct ggtgcgacgg gaggaagtgc aaccggttct gggggttcac
     701  ccccagcaag tggtgtgaca gcacctgcag caagcggaac gccaccagca
     751  actggagcgg cagcaacagt cacagggtcc gcacaacctg cttcaggagg
     801  aagtcctcca tcgactggtt cagggacagg agcacaagcc gatgcgaact
     851  cagcgaatac acaaaaagac aaagatgtgg atgctggtac aacaggagca
     901  ctatcagtac ctaaactcaa agccatgtca aagaaaatgc gattacccaa
     951  ggcaaagggt agtgacatct tgcacttgga tttcttactt aagtacaaac
    1001  cacaacagca agatatatcg aacacgagag caaccagaga agagttcgat
    1051  agatggtatg aagccataca aagagagtat gagattaatg agacacaaat
    1101  gaaaatcatt atgagtggtc ttatggtgtg gtgtatcgaa aatggttgct
    1151  caccaaatat taacggaagt tggactatga tggacggaga tgaacaaagg
    1201  gttttccctt tgaaaccagt tattgagaac gcatcaccaa catttcggca
    1251  aataatgcat cactttagtg atgccgctga agcatatatt gagtatagga
    1301  actcaaccga gagatacatg ccaagatacg gacttcagcg aaatctcacc
    1351  gactatagct tagcgcggta tgcttttgat ttttatgaga tgacatcacg
    1401  cacaccagct agagctaagg aagcccacat gcagatgaaa gccgcagcag
    1451  ttcgtggttc aaacactcga ctgttcggtc tggacggaaa tgtcggcgag
    1501  actcaggaga atacagagag acacacagct ggcgatgtta gtcgcaacat
    1551  gcactctctg ttgggagtgc agcagcacca ttaatctcct ggaaaccctg
    1601  tttgcagtac ctatagtatg tttttgtgta ctagtataaa agtgaggctc
    1651  cgcctcgtct ttacttttac tacctacgta ctataagtgt gaaccagtct
    1701  gcaagataca gggttggacc cagtgtcttc tggtgtagca cgtactagcg
    1751  tcgagccatg tcacggacag cactgggaat ggctttgcca tgtgtgctgc
    1801  gagtctcatg gtgagagac