Sequence of DPV Sugarcane mosaic virus

Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN8

ACC No: FM997895

Dated: 2010-05-19 | Length: 1818 | CRC: -143966923

                
ID   FM997895; SV 1; linear; genomic RNA; STD; VRL; 1818 BP.
XX
AC   FM997895;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN8
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1818
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1818
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Saccharum officinarum cv. Badila"
FT                   /isolate="YN8"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Shuangjiang"
FT                   /db_xref="taxon:12224"
FT   CDS             <1. .1584
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /protein_id="CAX36844.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSSGIQEDEIDSHCKMFANG
FT                   DDLLLAVHPDFEYILDGFQDHFSSLGLNFDFTSRTREKSDLWFMSTRGIKCENIYIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFANLAK
FT                   DGLAPYIAETALRNLYIGAGIKEEEIEKYYKQFAKDLPGYLEDYNEDVFHQAGTVDAGA
FT                   TGGGATGSGNPPSTGGVTAPATSGTPPVTGAAATATSVTQPASGGSPPSTGSGSGAQAD
FT                   ANSANAQKDKDVDAGTTGTLSVPKLKAMSKKMRLPKAKGSDILHLDFLLKYKPQQQDIS
FT                   NTRATREEFDRWYEAIQREYEINETQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQ
FT                   RVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYA
FT                   FDFYEMTSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNM
FT                   HSLLGVQQHH"
FT   mat_peptide     <1. .642
FT                   /product="NIb polymerase"
FT   mat_peptide     643. .1581
FT                   /product="Coat protein"
FT   3'UTR           1585. .1818
XX
SQ   Sequence 1818 BP; 562 A; 379 C; 441 G; 436 T; 0 other;

fm997895 Length: 1818  19-MAY-2010  Type: N  Check: 5038  ..

       1  ggtaacaata gtgggcagcc atcgacagtc gtcgataata cgctaatggt
      51  tatcttagct ttcaattatg ccatgttgtc aagtggaatc caggaggatg
     101  aaatagatag tcattgcaag atgttcgcaa atggtgatga tttactctta
     151  gcagtgcacc ctgatttcga atacattttg gatgggttcc aagatcactt
     201  tagtagtctc ggtttgaatt tcgatttcac atctaggaca agagaaaaat
     251  ctgacttgtg gttcatgtca acaagaggaa taaagtgtga gaacatctat
     301  atacctaaac ttgagaagga gcgcatagtt gcaatacttg aatgggaccg
     351  atcaaattta cctgaacatc gacttgaggc aatttgtgca gctatggtgg
     401  aagcatgggg ttatccagat cttatacatg agattcggaa gttctacgca
     451  tggttacttg aaatgcaacc cttcgccaat ttggctaaag atggcctagc
     501  tccatacatt gcagagacag cgttacgaaa tttgtacatt ggagcaggca
     551  taaaggaaga agagatcgaa aaatattata aacaattcgc caaagatcta
     601  ccaggatatt tggaggatta taacgaagat gtcttccatc aagcaggcac
     651  cgtcgatgct ggtgcaacgg ggggtggtgc aactggttct ggaaacccac
     701  cttcaacagg cggtgttacg gcacctgcta cgagtggaac cccgccagta
     751  actggggcag cagcaaccgc tacaagtgtt acacaacctg cctcaggagg
     801  aagccctcct tcaactggat cgggatccgg agcccaagct gatgcaaact
     851  cagcaaacgc acaaaaagac aaagatgtgg atgctggtac aacgggaaca
     901  ttatcagtac caaagcttaa agccatgtca aagaaaatgc gactacccaa
     951  ggcgaagggt agtgacatct tgcacttgga tttcttactg aaatacaaac
    1001  cacagcagca agatatatcg aacacgagag caaccagaga ggaattcgat
    1051  agatggtacg aagccataca aagagaatac gaaattaatg agacacaaat
    1101  gaaaatcatt atgagtggtt taatggtatg gtgtattgaa aatggttgct
    1151  caccaaacat aaacggaagt tggactatga tggatgggga tgaacaaaga
    1201  gttttccctt tgaagccagt cattgaaaac gcatcaccaa cattccgaca
    1251  aataatgcat cactttagtg atgctgctga agcgtacatt gagtacagaa
    1301  actcaacaga gagatatatg ccaaggtacg gacttcagcg aaatctcacc
    1351  gactatagcc tagcgcggta tgcttttgat ttctacgaaa tgacatcacg
    1401  cacaccagct agagctaagg aagcccacat gcagatgaaa gccgcagcag
    1451  ttcgtggttc aaacactcga ctgttcggtc tggacggaaa tgtcggcgag
    1501  actcaggaga atacagagag acacacagct ggcgacgtta gtcgcaatat
    1551  gcactctctg ttgggagtgc agcagcacca ttaatctcct ggaaaccctg
    1601  tttgcagtac ctatagtatg ttctgtgtac tagtacaaca gtgaggctca
    1651  gcctcgtctc tacttttact atttacgtac tattagtgtg aaccagtctg
    1701  caggatacag ggttggaccc agtgtcttct ggtgtagcac gtactagcgt
    1751  cgagccatgc cacggacagc actgggaatg gctttgccat gtgtgctgcg
    1801  agtctcatgg tgagagac