Sequence of DPV Yam chlorotic necrotic mosaic virus

Yam chlorotic necrotic mosaic virus partial polyprotein gene, genomic RNA, isolate 1

ACC No: FM997910

Dated: 2009-08-19 | Length: 1742 | CRC: 1914918804

                
ID   FM997910; SV 1; linear; genomic RNA; STD; VRL; 1742 BP.
XX
AC   FM997910;
XX
DT   19-AUG-2009 (Rel. 101, Created)
DT   19-AUG-2009 (Rel. 101, Last updated, Version 1)
XX
DE   Yam chlorotic necrotic mosaic virus partial polyprotein gene, genomic RNA,
DE   isolate 1
XX
KW   .
XX
OS   Yam chlorotic necrotic mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus; unclassified Macluravirus.
XX
RN   [1]
RP   1-1742
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Wang J.G., Zou X.J., Zheng H.Y., Adams M.J., Chen H.R., Chen J.P.;
RT   "Molecular characterization of a new macluravirus from yam in Yunnan,
RT   China";
RL   Arch. Virol. 154(8):1379-1380(2009).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1742
FT                   /organism="Yam chlorotic necrotic mosaic virus"
FT                   /host="Dioscorea zingbierensis"
FT                   /isolate="1"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan, Yongsheng county"
FT                   /note="virus is putative new member of the genus
FT                   Macluravirus, family Potyviridae"
FT                   /db_xref="taxon:596957"
FT   CDS             <1. .1533
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /protein_id="CAX36859.1"
FT                   /translation="GNNSGQPSTVVDNTLILMLSFLYAYIRKTGDTTCQHIDDRFKFVC
FT                   NGDDNKYSVSQDFHATFGGDFSKEIAELGLTYEFDDLTEDITLNPYMSLVMMRTPGGIG
FT                   FQLNPARIVSIVQWIKRGDVLQAAQAAFAAMIESFNDPWLFGILHLYLVWLICQYKDEI
FT                   RYAMDNNLGAVCYMDAYQVYALHYDTQEDVEHEKIGTHDAAQEFDEAQTNYVAPHINLQ
FT                   MDLTAPTSSTMLEASKSKGKEKVAEASGQRQSGEANQGTQPVEEPSNEPDTIDADNIEW
FT                   RIPAIGKGVEQYQIPRVKGKNVWNPRIIKKIAREQFTTTSQMVTQNQLEKWIEDVKRDL
FT                   ATTSNSDFYICLSSWCSWCANNGTSPELDTSQFMEIHANGQVTGVPIQIFVEPAILHGG
FT                   LRKVMRRFSKMTSRMLAEGGRMTSWGIKRGFTDRALIPYAFDFFVQTETTPKTIREQLN
FT                   QGKAAAIGRGTRRVMLLDGKIHGSRTSYERHTDGDQDEFEHGSLDDQRPALY"
FT   mat_peptide     <1. .666
FT                   /product="NIb polymerase"
FT   mat_peptide     667. .1530
FT                   /product="coat protein"
FT   3'UTR           1534. .1742
XX
SQ   Sequence 1742 BP; 550 A; 327 C; 401 G; 464 T; 0 other;

fm997910 Length: 1742  19-AUG-2009  Type: N  Check: 9092  ..

       1  gggaataaca gcgggcagcc aagcacagtt gttgacaaca ccttaattct
      51  catgttatcc ttcttgtatg catacatcag gaaaactgga gacacgacat
     101  gtcagcacat tgatgatagg ttcaaattcg tttgcaacgg cgatgacaac
     151  aaatactctg tttcacagga ttttcatgca acatttggtg gagatttttc
     201  aaaggaaatt gcagagttgg gcttaacata tgaatttgac gacttaactg
     251  aggacataac gctgaatcct tacatgagtc tagtgatgat gagaacacca
     301  ggaggcatcg gttttcaatt aaatccagcc agaattgttt ccatcgtgca
     351  gtggattaag aggggtgatg ttttacaagc agctcaagca gcatttgctg
     401  ctatgattga atcttttaat gatccgtggc tgtttggaat tttgcatctt
     451  tatcttgttt ggctcatttg tcaatataag gatgagattc gatacgcaat
     501  ggataacaat cttggggcag tgtgctacat ggatgcatat caagtttatg
     551  cgctacatta tgatacccag gaggatgttg aacatgaaaa gatcggaaca
     601  cacgatgcag ctcaagaatt tgatgaagcc cagacaaatt atgtcgctcc
     651  acacattaat ttacagatgg atctcacagc gccaacttca agcacaatgc
     701  tagaagcgag taagagcaaa gggaaagaaa aagttgccga agcatctgga
     751  cagcgacaaa gtggcgaagc caaccaagga actcaaccag ttgaagagcc
     801  aagtaacgaa ccagatacaa ttgatgctga taatattgaa tggagaatac
     851  cagcaattgg caaaggtgtt gagcaatatc aaataccacg agttaaaggg
     901  aaaaacgtct ggaaccctcg tattatcaag aaaatagctc gtgagcaatt
     951  cacaacaaca tctcagatgg tgacacaaaa ccaacttgag aaatggattg
    1001  aagatgtgaa gcgagatctc gccacaacaa gcaactctga tttctacatt
    1051  tgtctctcat catggtgctc gtggtgtgca aacaacggaa catcaccaga
    1101  attagacaca tcgcaattca tggaaattca cgcaaatggc caagtgactg
    1151  gtgtgccaat acagattttt gttgagccag ctattcttca tggcggttta
    1201  aggaaagtta tgcggcgctt cagtaaaatg acaagcagaa tgttggctga
    1251  agggggaaga atgacatcat ggggcatcaa aagaggtttc acggatcgcg
    1301  ccttaattcc atatgctttc gatttctttg ttcagactga aacgacaccg
    1351  aaaacaattc gagaacagtt aaatcaagga aaggctgcag caatcggtcg
    1401  tggaacgcgt agagtcatgc tgttggatgg aaagatacat gggagtcgaa
    1451  caagttatga aaggcacact gatggtgatc aagatgagtt tgaacatgga
    1501  agtttggacg accagcgtcc agccttatat taatacaaga tgttatgaca
    1551  aacacttgtt attattagca tttaggtaaa tggttatctt ttctgcttta
    1601  atttcatgat gtctatgagt tcaacgggag tttttgtggg tttctcttcc
    1651  gacgctcagc aaccctcaac atcttttgtt attctaaact tgagctggag
    1701  gctcagttgg gtttatcacc ttatcctgct ctgtagaaag gg