Sequence of DPV Yam chlorotic necrotic mosaic virus

Yam chlorotic necrotic mosaic virus partial polyprotein gene, genomic RNA, isolate 2

ACC No: FM997911

Dated: 2009-08-19 | Length: 1748 | CRC: -133353710

                
ID   FM997911; SV 1; linear; genomic RNA; STD; VRL; 1748 BP.
XX
AC   FM997911;
XX
DT   19-AUG-2009 (Rel. 101, Created)
DT   19-AUG-2009 (Rel. 101, Last updated, Version 1)
XX
DE   Yam chlorotic necrotic mosaic virus partial polyprotein gene, genomic RNA,
DE   isolate 2
XX
KW   .
XX
OS   Yam chlorotic necrotic mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus; unclassified Macluravirus.
XX
RN   [1]
RP   1-1748
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RA   Wang J.G., Zou X.J., Zheng H.Y., Adams M.J., Chen H.R., Chen J.P.;
RT   "Molecular characterization of a new macluravirus from yam in Yunnan,
RT   China";
RL   Arch. Virol. 154(8):1379-1380(2009).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1748
FT                   /organism="Yam chlorotic necrotic mosaic virus"
FT                   /host="Dioscorea zingbierensis"
FT                   /isolate="2"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan, Yongsheng county"
FT                   /note="virus is putative new member of the genus
FT                   Macluravirus, family Potyviridae"
FT                   /db_xref="taxon:596957"
FT   CDS             <1. .1533
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /protein_id="CAX36860.1"
FT                   /translation="GNNSGQPSTVVDNTLILMLSFLYSYIRKTGDSTCQHIDDRFRFVC
FT                   NGDDNKYSVSREFNATFGGDFSREIAELGLTYEFDDLTEDITLNPYMSLVMIRTPGGIG
FT                   FQLNPARIVSIVQWIKRGDVLQAAQAAFAAMIESFNDPWLFGILHLYLVWLICQYKEEI
FT                   RYAMDNDLGAVCYMDAYQVYALHYDTQSDIRSDALQADSLDYKHQVPVVNPDIQHIDLQ
FT                   MDLTAPAQGVASEPASRKGKEKVSEAPRDRQDKEAQQGHQPVEEPSNDPDAVDTDDIEW
FT                   RIPAIGKGVSQYQIPRIKGKNVWNPRILKKIAHEQYGTTSQMVTTNQLEKWVEAVKRDL
FT                   ATTNDSDFYICLSSWCLWCANNGTSPELDASQFMEIHANGQVTGVPIQIFVEPAIINGG
FT                   LRKVMRRFSKMTSKMLAEGGRMTAWGIKRGFTDRALIPYAFDFYVQTDTTPKTIREQLN
FT                   QGKAAAIGRGTRRAMLLDGKIHGSRTSYERHTDGDQDEFEHGSLDDQRPALY"
FT   mat_peptide     <1. .666
FT                   /product="NIb polymerase"
FT   mat_peptide     667. .1530
FT                   /product="coat protein"
FT   3'UTR           1534. .1748
XX
SQ   Sequence 1748 BP; 524 A; 336 C; 426 G; 462 T; 0 other;

fm997911 Length: 1748  19-AUG-2009  Type: N  Check: 4336  ..

       1  gggaataaca gcgggcagcc aagcacagtc gttgacaaca cgctgatcct
      51  catgctttca ttcctttatt catacatacg taaaactgga gattcaacat
     101  gtcagcacat tgatgatagg tttcgatttg tgtgcaatgg ggatgacaac
     151  aagtactctg tgtcccgaga gttcaacgca acatttggcg gagatttttc
     201  aagagagatt gcagagcttg gcttgacata tgagtttgat gatttaactg
     251  aggacataac gctaaatcca tacatgagtc ttgttatgat cagaacacct
     301  ggtggaattg gttttcagct gaacccagca agaatagtct caatcgtgca
     351  gtggattaag agaggagatg ttttacaagc agcacaggca gcttttgcag
     401  ccatgattga atcttttaac gatccgtggc tatttggaat cttgcacctc
     451  tacctcgtat ggttaatttg tcagtataaa gaggaaattc gatatgcaat
     501  ggataatgac ctcggtgcgg tttgttatat ggatgcctat caagtttatg
     551  cactgcatta cgacactcag agtgacattc gcagtgatgc attgcaagcg
     601  gatagtttgg attataaaca ccaggtacca gttgtaaatc cagacatcca
     651  gcacattgat cttcaaatgg atttaacagc gccagctcag ggtgtggcat
     701  cggaaccagc tagcaggaaa gggaaggaaa aggtctcaga agcaccaagg
     751  gatcgccaag acaaagaagc acagcaagga caccagccag ttgaggagcc
     801  aagcaatgat ccagatgctg tcgacacaga tgacattgaa tggagaatac
     851  cagcaattgg gaaaggtgtc agtcagtatc agataccgcg aatcaaagga
     901  aagaacgtct ggaatcctcg aatcctcaaa aagatagctc atgaacagta
     951  tggtacaaca tcacagatgg taacaacgaa ccaacttgaa aagtgggttg
    1001  aagctgttaa acgagatctt gccacaacaa acgactcaga tttttacatt
    1051  tgcctgtcgt cgtggtgctt gtggtgcgcc aacaatggga cttctccgga
    1101  gcttgacgca tcccaattta tggaaattca tgcaaatggg caagtgactg
    1151  gtgttccaat tcagattttt gttgaacctg ctataatcaa tggtggtctc
    1201  aggaaagtga tgcggcgttt cagtaaaatg acaagcaaaa tgttggctga
    1251  aggagggcga atgactgcat ggggaattaa gagagggttt acggatcgag
    1301  ctctaattcc ttacgccttt gatttttatg tccaaacaga cacaacaccg
    1351  aaaaccatcc gagagcagtt gaaccaagga aaagcagcag caattgggcg
    1401  tggaacacga agagccatgt tattagatgg aaagatacac gggagccgga
    1451  cgagctatga aaggcatact gatggtgatc aggacgagtt cgagcatgga
    1501  agtttggacg accagcgtcc agctttatat taatatgaga tgttgatttc
    1551  aacactcatt atttttagca cttaaagttc gcatcttctt taaatttgtt
    1601  ttaagtttga tgatgcttat gagttcaacg ggagtttttg tgggtttttc
    1651  ttccgacgct cagcaaccct cagcatcttt tgttttagtt taaacttgag
    1701  ctggatgctc agttggatgt tacatcttat cctgctctgt agaaaggg