Sequence of DPV Plum pox virus

Plum pox virus partial gene for polyprotein and 3'UTR, genomic RNA, strain D, isolate PPV-Szigetcsep1

ACC No: FN179154

Dated: 2009-02-25 | Length: 1826 | CRC: 868241309

                
ID   FN179154; SV 1; linear; genomic RNA; STD; VRL; 1826 BP.
XX
AC   FN179154;
XX
DT   25-FEB-2009 (Rel. 99, Created)
DT   25-FEB-2009 (Rel. 99, Last updated, Version 1)
XX
DE   Plum pox virus partial gene for polyprotein and 3'UTR, genomic RNA, strain
DE   D, isolate PPV-Szigetcsep1
XX
KW   .
XX
OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1826
RA   Palkovics L.;
RT   ;
RL   Submitted (25-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL   Palkovics L., Plant Pathology, Corvinus University of Budapest, Menesi Road
RL   44., H-1118, HUNGARY.
XX
RN   [2]
RA   Szathmary E., Palkovics L.;
RT   "Natural deletion is not unique in the coat protein (CP) of recombinant
RT   Plum pox virus (PPV) isolates in Hungary";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1826
FT                   /organism="Plum pox virus"
FT                   /host="Prunus armeniaca"
FT                   /lab_host="Nicotiana benthamiana"
FT                   /strain="D"
FT                   /isolate="PPV-Szigetcsep1"
FT                   /mol_type="genomic RNA"
FT                   /country="Hungary:Szigetcsep"
FT                   /collection_date="2008"
FT                   /identified_by="Erzsebet Szathmary"
FT                   /clone="B641.1"
FT                   /PCR_primers="fwd_name: Poty7941, fwd_seq:
FT                   ggaattcccgcggnaayaayagyggncarcc, rev_name: PolyT2, rev_seq:
FT                   cggggatcctcgagaagcttttttttttttttttt"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .1609
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /protein_id="CAX51131.1"
FT                   /translation="STVVDNTLMVILAMTYSLLKLGYHPDTHDCICRYFVNGDDLVLAV
FT                   HPAYESIYDELQEHFSQLGLNYTFATKTENKEELWFMSHKGVLYDDMYIPKLEPERIVS
FT                   ILEWDRSNEPIHRLEAICASMVEAWGYKELLREIRKFYSWVLEQAPYNALSKGGKAPYI
FT                   AETALKKLYSDTEASETEIERYLEAFYNDINDDGESNVVVHQADEREDEEEVDAGKPIV
FT                   VTAPAATSPILQPPPVIQPAPRTTAPMFNPIFTPATTQPATKPVPRVSGPQLQTFGTYG
FT                   NEDASPSNSNALVNTNRDRDVDAGSIGTFTVPRLRAMTSKLSLPKVKGKAIMNLNHLAH
FT                   YSPAQVDLSNTRAPQSCFQTWYEGVKRDYDVTDDEMSIILNGLMVWCIENGTSPNINGM
FT                   WVMMDGETQVEYPIKPLLDHAKPTFRQIMAHFSNVAEAYIEKRNYEKAYMPRYGIQRNL
FT                   TDYSLARYAFDFYEMTSTTPVRAREAHIQMKAAALRNVQNRLFGLDGNVGTQEEDTERH
FT                   TAGDVNRNMHNLLGVRGV"
FT   mat_peptide     <1. .616
FT                   /product="nuclear inclusion protein, NIb"
FT   mat_peptide     617. .1606
FT                   /product="coat protein, CP"
FT   3'UTR           1610. .1826
XX
SQ   Sequence 1826 BP; 538 A; 397 C; 431 G; 460 T; 0 other;

fn179154 Length: 1826  25-FEB-2009  Type: N  Check: 5237  ..

       1  ttcgacagtt gttgacaaca cactcatggt tattttggca atgacatatt
      51  cactccttaa gcttggatac catccggata cacacgattg catttgtcgg
     101  tacttcgtga atggtgatga tcttgtcctt gcagtgcacc cagcgtacga
     151  gagcatctac gatgagcttc aagaacactt ttcccaactt ggattgaatt
     201  acacattcgc cacaaagact gaaaacaagg aagagctgtg gtttatgtca
     251  cataaaggtg ttctctacga tgacatgtac attcccaagc tggagcctga
     301  gaggattgta tcaatacttg aatgggacag atcaaatgag ccaattcatc
     351  gattggaggc aatttgtgct tcaatggtgg aagcgtgggg ttataaggag
     401  ctgttgaggg agatccggaa attttacagt tgggttcttg aacaagcacc
     451  atacaatgct ctttcaaaag gtggaaaagc cccgtacatt gcggagacag
     501  cactgaagaa gctttactct gacactgaag cgtccgagac agaaattgag
     551  cgatatcttg aagcttttta caacgacatt aacgatgatg gcgagtccaa
     601  cgttgttgtg caccaagcgg acgaaagaga agacgaggag gaagttgacg
     651  caggcaagcc gattgtagtt actgcaccgg cagcaactag cccaatactt
     701  caaccacccc cagtcataca gcctgcaccc cggactacag cgccaatgtt
     751  caaccccatt ttcacgccag caacaactca accagcaaca aaaccagttc
     801  cacgggtgtc aggacctcaa ctgcaaactt ttggaacata tggtaatgag
     851  gatgcctcac ctagcaactc aaacgcgcta gtcaacacaa acagagatag
     901  ggacgtcgat gcaggatcaa ttggaacttt cacagtgcca cgtttgaggg
     951  caatgacttc gaaactatct ctgccaaagg tgaagggaaa ggccattatg
    1001  aacttgaacc atttggcaca ttatagtcct gcccaggttg acttgtcaaa
    1051  cacgagggct ccgcagtctt gtttccaaac ttggtatgaa ggagttaagc
    1101  gagattatga tgtcacggac gatgaaatga gcatcatttt aaatggtctt
    1151  atggtttggt gcatagagaa tggaacatcc ccgaatatca atggaatgtg
    1201  ggtgatgatg gatggggaaa cacaagtgga gtatccaata aagccattgt
    1251  tggatcatgc gaaacccact tttagacaaa ttatggcaca tttcagtaac
    1301  gtggctgaag cgtatattga aaaacgaaat tatgaaaaag catacatgcc
    1351  aaggtatgga attcagcgca acctgacaga ctacagcctc gccagatatg
    1401  cctttgattt ttacgaaatg acttcaacga cacccgtacg ggcacgtgaa
    1451  gctcatatcc agatgaaggc agcagcattg agaaatgttc aaaatcgttt
    1501  atttggcttg gatggaaacg tcggaaccca agaagaggac acagagagac
    1551  acaccgctgg tgacgttaat cgcaacatgc acaacctcct cggtgtgagg
    1601  ggagtgtagt ggtctcggta tctatcataa actctacctg ggtgagagtc
    1651  tagtcatcca gttgttttta gattcctgtt agcatccttt tctccgcttt
    1701  aatagcagtg cattcagtga ggttttacct ccatatgttc tagtctgtta
    1751  ttgtcgaaca caggcccttg tatctgatgt agcgagtgct tcactccatt
    1801  cgggttatag ttcttgtgca agagac