Sequence of DPV Plum pox virus

Plum pox virus partial gene for polyprotein, genomic RNA, strain D, isolate PPV-Soskut1

ACC No: FN179155

Dated: 2009-02-25 | Length: 794 | CRC: 627325301

                
ID   FN179155; SV 1; linear; genomic RNA; STD; VRL; 794 BP.
XX
AC   FN179155;
XX
DT   25-FEB-2009 (Rel. 99, Created)
DT   25-FEB-2009 (Rel. 99, Last updated, Version 1)
XX
DE   Plum pox virus partial gene for polyprotein, genomic RNA, strain D, isolate
DE   PPV-Soskut1
XX
KW   .
XX
OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-794
RA   Palkovics L.;
RT   ;
RL   Submitted (25-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL   Palkovics L., Plant Pathology, Corvinus University of Budapest, Menesi Road
RL   44., H-1118, HUNGARY.
XX
RN   [2]
RA   Szathmary E., Palkovics L.;
RT   "Natural deletion is not unique in the coat protein (CP) of recombinant
RT   Plum pox virus (PPV) isolates in Hungary";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .794
FT                   /organism="Plum pox virus"
FT                   /host="Prunus armeniaca cv. Bergeron"
FT                   /lab_host="Nicotiana benthamiana"
FT                   /strain="D"
FT                   /isolate="PPV-Soskut1"
FT                   /mol_type="genomic RNA"
FT                   /country="Hungary:Soskut"
FT                   /collection_date="2008"
FT                   /identified_by="Erzsebet Szathmary"
FT                   /clone="B655.1"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .>794
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /protein_id="CAX51132.1"
FT                   /translation="AWKELSWSEKFSAILESQRWRKHIPKPFIPKDGADLGGRYDISIR
FT                   SLLGNQYKRLRDIVRRKRDDVVCYTHQSMGKLFCKAIGISTSFLPSTLKMLDMLIVFGL
FT                   LLSIGATCNSMINEHKHLKQLAADREDKKRFKRLQVLYTRLLEKVGCTPTADEFLEYVG
FT                   GENPDLLKHAEDLIGDGQVVVHQSKRDSQANLERVVAFVALVMMLFDSERSDGVYKILN
FT                   KLKGIMGSVDQTVHHQSLDDIEDILDEKKLTVDFVLQSNEVA"
FT   mat_peptide     <1. .560
FT                   /product="P3 protein"
FT   mat_peptide     561. .716
FT                   /product="6K1 protein"
FT   mat_peptide     717. .>794
FT                   /product="CI protein"
XX
SQ   Sequence 794 BP; 246 A; 152 C; 197 G; 199 T; 0 other;

fn179155 Length: 794  25-FEB-2009  Type: N  Check: 2340  ..

       1  aagcttggaa agagttaagc tggtcggaaa aattctctgc aatcttggaa
      51  tcgcagcggt ggcgaaaaca tataccaaaa cctttcatcc cgaaagacgg
     101  cgcagattta ggaggcaggt acgacatctc cattcggtca ttacttggca
     151  accagtacaa acgcctgaga gacatagtcc gacggaaaag agacgatgtg
     201  gtttgttata cacaccagtc gatggggaag ctattttgca aagccatcgg
     251  aatttccaca agttttcttc caagcactct taaaatgctt gatatgctca
     301  tcgtgttcgg tctcttgctt tcaataggag ccacatgcaa ctcgatgatc
     351  aatgagcata aacatcttaa gcaacttgcc gccgatcggg aagataagaa
     401  aaggttcaaa agattgcaag tcttatacac gaggttatta gagaaggtcg
     451  gttgtacacc aacagcagat gaatttctgg agtatgtggg aggtgaaaac
     501  cctgatttac tgaaacatgc agaggatcta attggggatg gtcaagttgt
     551  tgttcatcaa agcaagagag actcacaagc aaatttggaa cgggttgtag
     601  catttgtagc tcttgttatg atgctgtttg actcggagcg aagtgacggc
     651  gtgtacaaga ttctcaataa actcaaaggc atcatgggga gtgttgacca
     701  gactgttcat caccagagct tggacgatat agaagatata ctggatgaga
     751  agaagctcac agtcgatttc gtgctgcaaa gtaacgaagt tgca