Sequence of DPV Tobacco bushy top virus
Tobacco bushy top virus complete genome, isolate YWSh, genomic RNA
ACC No: FN256356
Dated: 2012-01-10 | Length: 4152 | CRC: 458442758
ID FN256356; SV 1; linear; genomic RNA; STD; VRL; 4152 BP.
XX
AC FN256356;
XX
DT 10-JAN-2012 (Rel. 111, Created)
DT 10-JAN-2012 (Rel. 111, Last updated, Version 1)
XX
DE Tobacco bushy top virus complete genome, isolate YWSh, genomic RNA
XX
KW complete genome.
XX
OS Tobacco bushy top virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN [1]
RP 1-4152
RA Li F.;
RT ;
RL Submitted (12-MAR-2009) to the INSDC.
RL Li F., Plant Protection, Yunnan Agriculture University, 650201, CHINA.
XX
RN [2]
RA Li F., ChaoXian Y., HaiRu C.;
RT "Complete nucleotide sequence and genome organization of a Yunnan isolate
RT of Tobacco bushy top virus";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4152
FT /organism="Tobacco bushy top virus"
FT /host="Nicotiana tabacum"
FT /isolate="YWSh"
FT /mol_type="genomic RNA"
FT /country="China:Yunnan:Weishan"
FT /db_xref="taxon:184020"
FT CDS 11. .958
FT /product="hypothetical protein"
FT /note="ORF1"
FT /protein_id="CAX62132.1"
FT /translation="MEFINKIKQLLAMNFKPSKGVMSREELREAFDPTWELLITQARVT
FT TEVSRQCEDWYTLAVPTTYRLPELAVEEAVREKNIAREVAVKCPPEDPIPATPQGSQPV
FT PLVKSSERSSQDAEREALDEIWGLPTPEPHPLPKYFERRYQALARTCQKDYSNWQIVPY
FT TGGPRVLREEDVLPMATGVIPLPPPPPKASVIGAVLGLITRLTKVAGEVKSRLSVPPRE
FT PSPTCIGLEQVAGEPMGYMNAHSVAMELRARYGVQPATAANLQLGNRVAREILEKQCGA
FT TRDMVFILGHLATTLWFTPTMVDLALQCGPKDFC"
FT CDS 934. .2607
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="CAX62133.1"
FT /translation="MWAQGFLLGDVVARRGVETKVKTKIHPKIRVLRAARPRPVERVSY
FT QIDVVRPCADFGVHNNSLNNLVRGVNERVFYTDHKRKEPRRPSAGSFDKIDISEIKAFR
FT VQPWTLEEVVESYTGSQRVRYGQAVESLAVTPLSRNDARVKTFVKAEKINFTAKPDPAP
FT RVIQPRDPRFNACFAKYTKPLEPLLYKQLGKLYQFPCIAKGFNAVETGEIVAKKWKCFS
FT DPVCVGLDASRFDQHVSCDALRFTHSVYKRFVKGREVNKLLSWMYKNHALGSAKDGFVK
FT YEVEGCRMSGDMDTALGNCVLMVLMTRQLCKNLSIPHELMNNGDDCIVIFDRQYLSTFQ
FT DAVEPWFRELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRMVRHISSIAKDCCSVIDW
FT EQLPAWWNAIGECGIAVAGGIPIHNSFLRWLLRSGESNPDLLKHGAWKNEGLAWYRMGM
FT DLSHERHVSDEARASFHTAFGIEPSMQVALEQIYDSLPAPTIGGKRARVCKPGEMVLVD
FT SLPPRHFNDYFQDVGIGGSSSDYVVPGTHEFEPGTLWTQC"
FT CDS 2757. .3470
FT /product="hypothetical protein"
FT /note="ORF3"
FT /protein_id="CAX62134.1"
FT /translation="MSTIINVNTHPQGRYERGAAQRSIRGSDVKGARGIKPRRANPPPG
FT RKQGGNDPTAATQKSRKNRQRPETVPPHETHGGTFIHREDCGGVHAPHPGRCWRGGRNL
FT GPRQHATTPKQRWAPRKISDERRAQVDSILSPLLDTLKLSSEGGAPELLHCIGVLRREL
FT RRRREPVQPVHNVGAEDRVRSAQLSDEAPQSDADLQTSGEGQSVLPNPNSGGTEKCNVE
FT SVCNNCDRAPTTNKW"
FT CDS 2773. .3507
FT /product="hypothetical protein"
FT /note="ORF4"
FT /protein_id="CAX62135.1"
FT /translation="MSTLIHKADTKEELLNALYGEVTLRELEESNLGVLTPHRAENKVV
FT MTPLLPPRSQGRIASVLKRFRPTKHTGGLLFIEKIVVVFTPHIPDDAGGEVEIWVHDNM
FT LPHLNSVGPRVRFPMSGGPRLIAFYPPYSIPLSCQVRGAPRSYFIVSEYSGVNFVAGAS
FT PFSLYIMWEPKIECVAHNYLMRPPKAMPICRHLVKDSLSSLTLTQGALKSAMSNRYATT
FT ATGLPPPTSGEQDMEVVSHPPG"
XX
SQ Sequence 4152 BP; 1000 A; 1083 C; 1204 G; 865 T; 0 other;
fn256356 Length: 4152 10-JAN-2012 Type: N Check: 8985 ..
1 aggttacgat atggagttca tcaacaagat aaagcaattg ttggcaatga
51 atttcaagcc ctcaaagggc gtaatgtctc gggaggagct ccgtgaagct
101 ttcgatccca cttgggagct cctcatcaca caggctcgtg tcaccactga
151 ggtgtcacgc cagtgtgagg attggtacac tctagctgta cccaccacct
201 accgcttgcc agagttggcg gtagaagagg ctgtgcgtga aaagaacata
251 gcgcgagagg tggcggtcaa gtgcccccct gaggacccga ttcctgcaac
301 cccgcagggg tcacagcctg tccccttggt gaagagctct gaacgctcta
351 gccaggatgc cgagcgtgag gcgctcgatg agatatgggg gctccccact
401 cccgagccac atcctctgcc caagtacttc gagcggcgtt accaggcgct
451 ggctcggacc tgccagaagg actactccaa ctggcagatt gtaccctaca
501 cgggtgggcc acgcgtgctg agagaggagg acgtgctacc aatggccacg
551 ggggttatac ccttgccacc acccccccct aaggcttctg taattggagc
601 agtcttgggg ctgattaccc gcctcaccaa ggtggcgggg gaggtgaaga
651 gcaggctgag cgtaccgccg cgggagccct cgcccacttg cattggctta
701 gagcaggtgg ctggtgagcc catgggctac atgaatgcac actctgtagc
751 catggagttg cgggctaggt acggagttca gcccgccaca gctgcgaact
801 tgcagcttgg aaaccgggtg gccagggaaa tcctggaaaa acagtgcggg
851 gccacccgcg acatggtgtt catactcggg cacctcgcca ccaccttgtg
901 gttcaccccc actatggtgg acttggccct tcaatgtggg cccaaggatt
951 tttgctaggg gatgtggtcg ctcggagggg tgtagaaact aaagtgaaga
1001 cgaaaatcca ccccaaaatc cgagtgctta gggcggcccg tccccggccc
1051 gtagaaagag tgtcgtacca aatcgacgtg gtgcggccct gtgctgactt
1101 tggagtccac aacaactccc tcaacaattt agtgcgaggg gttaacgagc
1151 gggtgttcta cacagaccac aagaggaaag agccccgcag accttcagct
1201 ggtagttttg acaagatcga catcagcgag ataaaagcgt tcagagtcca
1251 gccgtggact ctcgaggagg tcgttgagag ctacacgggt agccagaggg
1301 tgcggtatgg acaagctgtt gaatccttag cagtaacgcc cctctcacga
1351 aacgacgccc gggtcaaaac atttgtaaag gcggaaaaga taaacttcac
1401 cgccaagccc gacccggctc ctcgcgttat ccagccgcgg gatccaaggt
1451 tcaatgcctg ctttgccaaa tacacaaagc ccttggaacc cctcctatac
1501 aagcagctgg gtaagcttta ccagttccca tgcatcgcaa aaggctttaa
1551 cgccgtagag accggagaga tagtagccaa gaagtggaag tgcttcagtg
1601 accctgtctg tgtgggttta gatgcctccc ggtttgacca gcatgtgtca
1651 tgcgatgcac tacggttcac ccatagcgtg tacaaacggt tcgtgaaggg
1701 cagggaagtg aacaagttgc tttcctggat gtacaaaaac cacgctctgg
1751 gaagtgcgaa ggacggattc gtcaagtacg aggtggaagg ctgtcggatg
1801 agtggggata tggatacagc cctagggaat tgtgtcctga tggtcctcat
1851 gactaggcag ctatgcaaga acctctccat accgcacgaa ctgatgaaca
1901 acggcgacga ctgcatagtt atatttgaca ggcagtacct gtccaccttt
1951 caggatgcag ttgagccttg gtttagggaa ctagggttta caatgaaggt
2001 cgaggagcca gtctaccatc tcgaaagagt agacttttgc cagacccgcc
2051 ccgtgtatga cggcaagaag tggagaatgg tcaggcatat ctcaagtata
2101 gcgaaggatt gctgttcagt tattgactgg gaacagttac cggcttggtg
2151 gaacgccatt ggagaatgtg gcattgccgt ggctggtggt atacccatac
2201 acaacagctt cttgagatgg ctcctgagat caggtgagag caaccctgat
2251 ctcctgaagc atggcgcatg gaaaaatgag ggcctagcgt ggtaccggat
2301 gggcatggac ctatcccatg agagacacgt tagtgatgaa gcgcgcgcca
2351 gcttccacac tgcctttgga atcgaaccat ccatgcaggt cgcattagag
2401 cagatctatg actcattgcc tgctcccacc attggtggga aacgagccag
2451 agtgtgtaaa cctggtgaaa tggtattggt tgattcactc ccaccgcggc
2501 actttaatga ttacttccag gatgttggaa taggggggag tagcagtgat
2551 tacgttgtcc cggggaccca cgagttcgaa ccggggacgt tgtggacaca
2601 atgctagtcg attgagttag ccaggcatat ggttgcaagc gctggggact
2651 tagtccataa agccactggt aaagagcctc cagtaggcag gcccgccttg
2701 atgagtctta acgagtggac acccgggtag ccgcggacaa tgcccgacgg
2751 gtttcaatgt ctacgatcat aaatgtcaac actcatccac aaggcagata
2801 cgaaagagga gctgctcaac gctctatacg gggaagtgac gttaagggag
2851 ctcgaggaat caaacctcgg cgtgctaacc ccccaccggg ccgaaaacaa
2901 ggtggtaatg accccactgc tgccacccag aagtcaagga agaatcgcca
2951 gcgtcctgaa acggttccgc cccacgaaac acacgggggg acttttattc
3001 atagagaaga ttgtggtggt gttcacgccc cacatcccgg acgatgctgg
3051 cggggaggta gaaatctggg tccacgacaa catgctacca cacctaaaca
3101 gcgttgggcc ccgcgtaaga tttccgatga gcggagggcc caggttgata
3151 gcattttatc ccccctactc gataccctta agttgtcaag tgaggggggc
3201 gccccggagc tacttcattg tatcggagta ctccggcgtg aacttcgtcg
3251 caggcgcgag cccgttcagc ctgtacataa tgtgggagcc gaagatagag
3301 tgcgtagcgc acaactatct gatgaggccc cccaaagcga tgccgatttg
3351 cagacatctg gtgaaggaca gtctgtcctc cctaacccta actcaggggg
3401 cactgaaaag tgcaatgtcg aatcggtatg caacaactgc gaccgggctc
3451 ccaccaccaa caagtggtga gcaggatatg gaggtagtgt cccatcctcc
3501 aggctaaatt ggacacaaaa cggagctaga tttagtgttg caattgctag
3551 accgttagcc actacgctag acagtgcgac aactgaggtc gtctatgacc
3601 cacagggtgc catcctgtgc aatttccaac ccttggcaag ggtgatccta
3651 gaggacgcgg gcattgactt gcctggggat gcttctagtt acataccgga
3701 gtggttgata gacctctgtg taaggaaaca ggtgtgagac cggatcctgg
3751 gaaacaggct gggatggtcc cgtaagttcg ggcggtgccc ttctggggta
3801 accccaccgc cgacgtatca cctcacacgc tgttgaccga taagccgagg
3851 tattggaacc gcaccactct ggaggttccc tctccttatg aggtggaggt
3901 acagcacgcc ttaagtgtct gcgatccggt gttcacgtgc cggtggtccc
3951 cctagttaac gtggtgccac agtctgtggt aggggcagct ggtcggattc
4001 cagcagaaac caagtagcaa gtggacgttg ctacctcgag cctagagtca
4051 tgggcccgca tcgacgtttg cggtaactca cagcgggcga taatagctgt
4101 tgagaatgtc ggttcctgac ttagcgggag atgagcactt tctctcgcgc
4151 cc