Sequence of DPV Tobacco bushy top virus
Tobacco bushy top virus complete genome, isolate YWSh, genomic RNA
ACC No: FN256356
Dated: 2012-01-10 | Length: 4152 | CRC: 458442758
ID FN256356; SV 1; linear; genomic RNA; STD; VRL; 4152 BP. XX AC FN256356; XX DT 10-JAN-2012 (Rel. 111, Created) DT 10-JAN-2012 (Rel. 111, Last updated, Version 1) XX DE Tobacco bushy top virus complete genome, isolate YWSh, genomic RNA XX KW complete genome. XX OS Tobacco bushy top virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus. XX RN [1] RP 1-4152 RA Li F.; RT ; RL Submitted (12-MAR-2009) to the INSDC. RL Li F., Plant Protection, Yunnan Agriculture University, 650201, CHINA. XX RN [2] RA Li F., ChaoXian Y., HaiRu C.; RT "Complete nucleotide sequence and genome organization of a Yunnan isolate RT of Tobacco bushy top virus"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1. .4152 FT /organism="Tobacco bushy top virus" FT /host="Nicotiana tabacum" FT /isolate="YWSh" FT /mol_type="genomic RNA" FT /country="China:Yunnan:Weishan" FT /db_xref="taxon:184020" FT CDS 11. .958 FT /product="hypothetical protein" FT /note="ORF1" FT /protein_id="CAX62132.1" FT /translation="MEFINKIKQLLAMNFKPSKGVMSREELREAFDPTWELLITQARVT FT TEVSRQCEDWYTLAVPTTYRLPELAVEEAVREKNIAREVAVKCPPEDPIPATPQGSQPV FT PLVKSSERSSQDAEREALDEIWGLPTPEPHPLPKYFERRYQALARTCQKDYSNWQIVPY FT TGGPRVLREEDVLPMATGVIPLPPPPPKASVIGAVLGLITRLTKVAGEVKSRLSVPPRE FT PSPTCIGLEQVAGEPMGYMNAHSVAMELRARYGVQPATAANLQLGNRVAREILEKQCGA FT TRDMVFILGHLATTLWFTPTMVDLALQCGPKDFC" FT CDS 934. .2607 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /protein_id="CAX62133.1" FT /translation="MWAQGFLLGDVVARRGVETKVKTKIHPKIRVLRAARPRPVERVSY FT QIDVVRPCADFGVHNNSLNNLVRGVNERVFYTDHKRKEPRRPSAGSFDKIDISEIKAFR FT VQPWTLEEVVESYTGSQRVRYGQAVESLAVTPLSRNDARVKTFVKAEKINFTAKPDPAP FT RVIQPRDPRFNACFAKYTKPLEPLLYKQLGKLYQFPCIAKGFNAVETGEIVAKKWKCFS FT DPVCVGLDASRFDQHVSCDALRFTHSVYKRFVKGREVNKLLSWMYKNHALGSAKDGFVK FT YEVEGCRMSGDMDTALGNCVLMVLMTRQLCKNLSIPHELMNNGDDCIVIFDRQYLSTFQ FT DAVEPWFRELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRMVRHISSIAKDCCSVIDW FT EQLPAWWNAIGECGIAVAGGIPIHNSFLRWLLRSGESNPDLLKHGAWKNEGLAWYRMGM FT DLSHERHVSDEARASFHTAFGIEPSMQVALEQIYDSLPAPTIGGKRARVCKPGEMVLVD FT SLPPRHFNDYFQDVGIGGSSSDYVVPGTHEFEPGTLWTQC" FT CDS 2757. .3470 FT /product="hypothetical protein" FT /note="ORF3" FT /protein_id="CAX62134.1" FT /translation="MSTIINVNTHPQGRYERGAAQRSIRGSDVKGARGIKPRRANPPPG FT RKQGGNDPTAATQKSRKNRQRPETVPPHETHGGTFIHREDCGGVHAPHPGRCWRGGRNL FT GPRQHATTPKQRWAPRKISDERRAQVDSILSPLLDTLKLSSEGGAPELLHCIGVLRREL FT RRRREPVQPVHNVGAEDRVRSAQLSDEAPQSDADLQTSGEGQSVLPNPNSGGTEKCNVE FT SVCNNCDRAPTTNKW" FT CDS 2773. .3507 FT /product="hypothetical protein" FT /note="ORF4" FT /protein_id="CAX62135.1" FT /translation="MSTLIHKADTKEELLNALYGEVTLRELEESNLGVLTPHRAENKVV FT MTPLLPPRSQGRIASVLKRFRPTKHTGGLLFIEKIVVVFTPHIPDDAGGEVEIWVHDNM FT LPHLNSVGPRVRFPMSGGPRLIAFYPPYSIPLSCQVRGAPRSYFIVSEYSGVNFVAGAS FT PFSLYIMWEPKIECVAHNYLMRPPKAMPICRHLVKDSLSSLTLTQGALKSAMSNRYATT FT ATGLPPPTSGEQDMEVVSHPPG" XX SQ Sequence 4152 BP; 1000 A; 1083 C; 1204 G; 865 T; 0 other; fn256356 Length: 4152 10-JAN-2012 Type: N Check: 8985 .. 1 aggttacgat atggagttca tcaacaagat aaagcaattg ttggcaatga 51 atttcaagcc ctcaaagggc gtaatgtctc gggaggagct ccgtgaagct 101 ttcgatccca cttgggagct cctcatcaca caggctcgtg tcaccactga 151 ggtgtcacgc cagtgtgagg attggtacac tctagctgta cccaccacct 201 accgcttgcc agagttggcg gtagaagagg ctgtgcgtga aaagaacata 251 gcgcgagagg tggcggtcaa gtgcccccct gaggacccga ttcctgcaac 301 cccgcagggg tcacagcctg tccccttggt gaagagctct gaacgctcta 351 gccaggatgc cgagcgtgag gcgctcgatg agatatgggg gctccccact 401 cccgagccac atcctctgcc caagtacttc gagcggcgtt accaggcgct 451 ggctcggacc tgccagaagg actactccaa ctggcagatt gtaccctaca 501 cgggtgggcc acgcgtgctg agagaggagg acgtgctacc aatggccacg 551 ggggttatac ccttgccacc acccccccct aaggcttctg taattggagc 601 agtcttgggg ctgattaccc gcctcaccaa ggtggcgggg gaggtgaaga 651 gcaggctgag cgtaccgccg cgggagccct cgcccacttg cattggctta 701 gagcaggtgg ctggtgagcc catgggctac atgaatgcac actctgtagc 751 catggagttg cgggctaggt acggagttca gcccgccaca gctgcgaact 801 tgcagcttgg aaaccgggtg gccagggaaa tcctggaaaa acagtgcggg 851 gccacccgcg acatggtgtt catactcggg cacctcgcca ccaccttgtg 901 gttcaccccc actatggtgg acttggccct tcaatgtggg cccaaggatt 951 tttgctaggg gatgtggtcg ctcggagggg tgtagaaact aaagtgaaga 1001 cgaaaatcca ccccaaaatc cgagtgctta gggcggcccg tccccggccc 1051 gtagaaagag tgtcgtacca aatcgacgtg gtgcggccct gtgctgactt 1101 tggagtccac aacaactccc tcaacaattt agtgcgaggg gttaacgagc 1151 gggtgttcta cacagaccac aagaggaaag agccccgcag accttcagct 1201 ggtagttttg acaagatcga catcagcgag ataaaagcgt tcagagtcca 1251 gccgtggact ctcgaggagg tcgttgagag ctacacgggt agccagaggg 1301 tgcggtatgg acaagctgtt gaatccttag cagtaacgcc cctctcacga 1351 aacgacgccc gggtcaaaac atttgtaaag gcggaaaaga taaacttcac 1401 cgccaagccc gacccggctc ctcgcgttat ccagccgcgg gatccaaggt 1451 tcaatgcctg ctttgccaaa tacacaaagc ccttggaacc cctcctatac 1501 aagcagctgg gtaagcttta ccagttccca tgcatcgcaa aaggctttaa 1551 cgccgtagag accggagaga tagtagccaa gaagtggaag tgcttcagtg 1601 accctgtctg tgtgggttta gatgcctccc ggtttgacca gcatgtgtca 1651 tgcgatgcac tacggttcac ccatagcgtg tacaaacggt tcgtgaaggg 1701 cagggaagtg aacaagttgc tttcctggat gtacaaaaac cacgctctgg 1751 gaagtgcgaa ggacggattc gtcaagtacg aggtggaagg ctgtcggatg 1801 agtggggata tggatacagc cctagggaat tgtgtcctga tggtcctcat 1851 gactaggcag ctatgcaaga acctctccat accgcacgaa ctgatgaaca 1901 acggcgacga ctgcatagtt atatttgaca ggcagtacct gtccaccttt 1951 caggatgcag ttgagccttg gtttagggaa ctagggttta caatgaaggt 2001 cgaggagcca gtctaccatc tcgaaagagt agacttttgc cagacccgcc 2051 ccgtgtatga cggcaagaag tggagaatgg tcaggcatat ctcaagtata 2101 gcgaaggatt gctgttcagt tattgactgg gaacagttac cggcttggtg 2151 gaacgccatt ggagaatgtg gcattgccgt ggctggtggt atacccatac 2201 acaacagctt cttgagatgg ctcctgagat caggtgagag caaccctgat 2251 ctcctgaagc atggcgcatg gaaaaatgag ggcctagcgt ggtaccggat 2301 gggcatggac ctatcccatg agagacacgt tagtgatgaa gcgcgcgcca 2351 gcttccacac tgcctttgga atcgaaccat ccatgcaggt cgcattagag 2401 cagatctatg actcattgcc tgctcccacc attggtggga aacgagccag 2451 agtgtgtaaa cctggtgaaa tggtattggt tgattcactc ccaccgcggc 2501 actttaatga ttacttccag gatgttggaa taggggggag tagcagtgat 2551 tacgttgtcc cggggaccca cgagttcgaa ccggggacgt tgtggacaca 2601 atgctagtcg attgagttag ccaggcatat ggttgcaagc gctggggact 2651 tagtccataa agccactggt aaagagcctc cagtaggcag gcccgccttg 2701 atgagtctta acgagtggac acccgggtag ccgcggacaa tgcccgacgg 2751 gtttcaatgt ctacgatcat aaatgtcaac actcatccac aaggcagata 2801 cgaaagagga gctgctcaac gctctatacg gggaagtgac gttaagggag 2851 ctcgaggaat caaacctcgg cgtgctaacc ccccaccggg ccgaaaacaa 2901 ggtggtaatg accccactgc tgccacccag aagtcaagga agaatcgcca 2951 gcgtcctgaa acggttccgc cccacgaaac acacgggggg acttttattc 3001 atagagaaga ttgtggtggt gttcacgccc cacatcccgg acgatgctgg 3051 cggggaggta gaaatctggg tccacgacaa catgctacca cacctaaaca 3101 gcgttgggcc ccgcgtaaga tttccgatga gcggagggcc caggttgata 3151 gcattttatc ccccctactc gataccctta agttgtcaag tgaggggggc 3201 gccccggagc tacttcattg tatcggagta ctccggcgtg aacttcgtcg 3251 caggcgcgag cccgttcagc ctgtacataa tgtgggagcc gaagatagag 3301 tgcgtagcgc acaactatct gatgaggccc cccaaagcga tgccgatttg 3351 cagacatctg gtgaaggaca gtctgtcctc cctaacccta actcaggggg 3401 cactgaaaag tgcaatgtcg aatcggtatg caacaactgc gaccgggctc 3451 ccaccaccaa caagtggtga gcaggatatg gaggtagtgt cccatcctcc 3501 aggctaaatt ggacacaaaa cggagctaga tttagtgttg caattgctag 3551 accgttagcc actacgctag acagtgcgac aactgaggtc gtctatgacc 3601 cacagggtgc catcctgtgc aatttccaac ccttggcaag ggtgatccta 3651 gaggacgcgg gcattgactt gcctggggat gcttctagtt acataccgga 3701 gtggttgata gacctctgtg taaggaaaca ggtgtgagac cggatcctgg 3751 gaaacaggct gggatggtcc cgtaagttcg ggcggtgccc ttctggggta 3801 accccaccgc cgacgtatca cctcacacgc tgttgaccga taagccgagg 3851 tattggaacc gcaccactct ggaggttccc tctccttatg aggtggaggt 3901 acagcacgcc ttaagtgtct gcgatccggt gttcacgtgc cggtggtccc 3951 cctagttaac gtggtgccac agtctgtggt aggggcagct ggtcggattc 4001 cagcagaaac caagtagcaa gtggacgttg ctacctcgag cctagagtca 4051 tgggcccgca tcgacgtttg cggtaactca cagcgggcga taatagctgt 4101 tgagaatgtc ggttcctgac ttagcgggag atgagcactt tctctcgcgc 4151 cc