Sequence of DPV Tobacco bushy top virus

Tobacco bushy top virus complete genome, isolate YWSh, genomic RNA

ACC No: FN256356

Dated: 2012-01-10 | Length: 4152 | CRC: 458442758

                
ID   FN256356; SV 1; linear; genomic RNA; STD; VRL; 4152 BP.
XX
AC   FN256356;
XX
DT   10-JAN-2012 (Rel. 111, Created)
DT   10-JAN-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Tobacco bushy top virus complete genome, isolate YWSh, genomic RNA
XX
KW   complete genome.
XX
OS   Tobacco bushy top virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN   [1]
RP   1-4152
RA   Li F.;
RT   ;
RL   Submitted (12-MAR-2009) to the INSDC.
RL   Li F., Plant Protection, Yunnan Agriculture University, 650201, CHINA.
XX
RN   [2]
RA   Li F., ChaoXian Y., HaiRu C.;
RT   "Complete nucleotide sequence and genome organization of a Yunnan isolate
RT   of Tobacco bushy top virus";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4152
FT                   /organism="Tobacco bushy top virus"
FT                   /host="Nicotiana tabacum"
FT                   /isolate="YWSh"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan:Weishan"
FT                   /db_xref="taxon:184020"
FT   CDS             11. .958
FT                   /product="hypothetical protein"
FT                   /note="ORF1"
FT                   /protein_id="CAX62132.1"
FT                   /translation="MEFINKIKQLLAMNFKPSKGVMSREELREAFDPTWELLITQARVT
FT                   TEVSRQCEDWYTLAVPTTYRLPELAVEEAVREKNIAREVAVKCPPEDPIPATPQGSQPV
FT                   PLVKSSERSSQDAEREALDEIWGLPTPEPHPLPKYFERRYQALARTCQKDYSNWQIVPY
FT                   TGGPRVLREEDVLPMATGVIPLPPPPPKASVIGAVLGLITRLTKVAGEVKSRLSVPPRE
FT                   PSPTCIGLEQVAGEPMGYMNAHSVAMELRARYGVQPATAANLQLGNRVAREILEKQCGA
FT                   TRDMVFILGHLATTLWFTPTMVDLALQCGPKDFC"
FT   CDS             934. .2607
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /protein_id="CAX62133.1"
FT                   /translation="MWAQGFLLGDVVARRGVETKVKTKIHPKIRVLRAARPRPVERVSY
FT                   QIDVVRPCADFGVHNNSLNNLVRGVNERVFYTDHKRKEPRRPSAGSFDKIDISEIKAFR
FT                   VQPWTLEEVVESYTGSQRVRYGQAVESLAVTPLSRNDARVKTFVKAEKINFTAKPDPAP
FT                   RVIQPRDPRFNACFAKYTKPLEPLLYKQLGKLYQFPCIAKGFNAVETGEIVAKKWKCFS
FT                   DPVCVGLDASRFDQHVSCDALRFTHSVYKRFVKGREVNKLLSWMYKNHALGSAKDGFVK
FT                   YEVEGCRMSGDMDTALGNCVLMVLMTRQLCKNLSIPHELMNNGDDCIVIFDRQYLSTFQ
FT                   DAVEPWFRELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRMVRHISSIAKDCCSVIDW
FT                   EQLPAWWNAIGECGIAVAGGIPIHNSFLRWLLRSGESNPDLLKHGAWKNEGLAWYRMGM
FT                   DLSHERHVSDEARASFHTAFGIEPSMQVALEQIYDSLPAPTIGGKRARVCKPGEMVLVD
FT                   SLPPRHFNDYFQDVGIGGSSSDYVVPGTHEFEPGTLWTQC"
FT   CDS             2757. .3470
FT                   /product="hypothetical protein"
FT                   /note="ORF3"
FT                   /protein_id="CAX62134.1"
FT                   /translation="MSTIINVNTHPQGRYERGAAQRSIRGSDVKGARGIKPRRANPPPG
FT                   RKQGGNDPTAATQKSRKNRQRPETVPPHETHGGTFIHREDCGGVHAPHPGRCWRGGRNL
FT                   GPRQHATTPKQRWAPRKISDERRAQVDSILSPLLDTLKLSSEGGAPELLHCIGVLRREL
FT                   RRRREPVQPVHNVGAEDRVRSAQLSDEAPQSDADLQTSGEGQSVLPNPNSGGTEKCNVE
FT                   SVCNNCDRAPTTNKW"
FT   CDS             2773. .3507
FT                   /product="hypothetical protein"
FT                   /note="ORF4"
FT                   /protein_id="CAX62135.1"
FT                   /translation="MSTLIHKADTKEELLNALYGEVTLRELEESNLGVLTPHRAENKVV
FT                   MTPLLPPRSQGRIASVLKRFRPTKHTGGLLFIEKIVVVFTPHIPDDAGGEVEIWVHDNM
FT                   LPHLNSVGPRVRFPMSGGPRLIAFYPPYSIPLSCQVRGAPRSYFIVSEYSGVNFVAGAS
FT                   PFSLYIMWEPKIECVAHNYLMRPPKAMPICRHLVKDSLSSLTLTQGALKSAMSNRYATT
FT                   ATGLPPPTSGEQDMEVVSHPPG"
XX
SQ   Sequence 4152 BP; 1000 A; 1083 C; 1204 G; 865 T; 0 other;

fn256356 Length: 4152  10-JAN-2012  Type: N  Check: 8985  ..

       1  aggttacgat atggagttca tcaacaagat aaagcaattg ttggcaatga
      51  atttcaagcc ctcaaagggc gtaatgtctc gggaggagct ccgtgaagct
     101  ttcgatccca cttgggagct cctcatcaca caggctcgtg tcaccactga
     151  ggtgtcacgc cagtgtgagg attggtacac tctagctgta cccaccacct
     201  accgcttgcc agagttggcg gtagaagagg ctgtgcgtga aaagaacata
     251  gcgcgagagg tggcggtcaa gtgcccccct gaggacccga ttcctgcaac
     301  cccgcagggg tcacagcctg tccccttggt gaagagctct gaacgctcta
     351  gccaggatgc cgagcgtgag gcgctcgatg agatatgggg gctccccact
     401  cccgagccac atcctctgcc caagtacttc gagcggcgtt accaggcgct
     451  ggctcggacc tgccagaagg actactccaa ctggcagatt gtaccctaca
     501  cgggtgggcc acgcgtgctg agagaggagg acgtgctacc aatggccacg
     551  ggggttatac ccttgccacc acccccccct aaggcttctg taattggagc
     601  agtcttgggg ctgattaccc gcctcaccaa ggtggcgggg gaggtgaaga
     651  gcaggctgag cgtaccgccg cgggagccct cgcccacttg cattggctta
     701  gagcaggtgg ctggtgagcc catgggctac atgaatgcac actctgtagc
     751  catggagttg cgggctaggt acggagttca gcccgccaca gctgcgaact
     801  tgcagcttgg aaaccgggtg gccagggaaa tcctggaaaa acagtgcggg
     851  gccacccgcg acatggtgtt catactcggg cacctcgcca ccaccttgtg
     901  gttcaccccc actatggtgg acttggccct tcaatgtggg cccaaggatt
     951  tttgctaggg gatgtggtcg ctcggagggg tgtagaaact aaagtgaaga
    1001  cgaaaatcca ccccaaaatc cgagtgctta gggcggcccg tccccggccc
    1051  gtagaaagag tgtcgtacca aatcgacgtg gtgcggccct gtgctgactt
    1101  tggagtccac aacaactccc tcaacaattt agtgcgaggg gttaacgagc
    1151  gggtgttcta cacagaccac aagaggaaag agccccgcag accttcagct
    1201  ggtagttttg acaagatcga catcagcgag ataaaagcgt tcagagtcca
    1251  gccgtggact ctcgaggagg tcgttgagag ctacacgggt agccagaggg
    1301  tgcggtatgg acaagctgtt gaatccttag cagtaacgcc cctctcacga
    1351  aacgacgccc gggtcaaaac atttgtaaag gcggaaaaga taaacttcac
    1401  cgccaagccc gacccggctc ctcgcgttat ccagccgcgg gatccaaggt
    1451  tcaatgcctg ctttgccaaa tacacaaagc ccttggaacc cctcctatac
    1501  aagcagctgg gtaagcttta ccagttccca tgcatcgcaa aaggctttaa
    1551  cgccgtagag accggagaga tagtagccaa gaagtggaag tgcttcagtg
    1601  accctgtctg tgtgggttta gatgcctccc ggtttgacca gcatgtgtca
    1651  tgcgatgcac tacggttcac ccatagcgtg tacaaacggt tcgtgaaggg
    1701  cagggaagtg aacaagttgc tttcctggat gtacaaaaac cacgctctgg
    1751  gaagtgcgaa ggacggattc gtcaagtacg aggtggaagg ctgtcggatg
    1801  agtggggata tggatacagc cctagggaat tgtgtcctga tggtcctcat
    1851  gactaggcag ctatgcaaga acctctccat accgcacgaa ctgatgaaca
    1901  acggcgacga ctgcatagtt atatttgaca ggcagtacct gtccaccttt
    1951  caggatgcag ttgagccttg gtttagggaa ctagggttta caatgaaggt
    2001  cgaggagcca gtctaccatc tcgaaagagt agacttttgc cagacccgcc
    2051  ccgtgtatga cggcaagaag tggagaatgg tcaggcatat ctcaagtata
    2101  gcgaaggatt gctgttcagt tattgactgg gaacagttac cggcttggtg
    2151  gaacgccatt ggagaatgtg gcattgccgt ggctggtggt atacccatac
    2201  acaacagctt cttgagatgg ctcctgagat caggtgagag caaccctgat
    2251  ctcctgaagc atggcgcatg gaaaaatgag ggcctagcgt ggtaccggat
    2301  gggcatggac ctatcccatg agagacacgt tagtgatgaa gcgcgcgcca
    2351  gcttccacac tgcctttgga atcgaaccat ccatgcaggt cgcattagag
    2401  cagatctatg actcattgcc tgctcccacc attggtggga aacgagccag
    2451  agtgtgtaaa cctggtgaaa tggtattggt tgattcactc ccaccgcggc
    2501  actttaatga ttacttccag gatgttggaa taggggggag tagcagtgat
    2551  tacgttgtcc cggggaccca cgagttcgaa ccggggacgt tgtggacaca
    2601  atgctagtcg attgagttag ccaggcatat ggttgcaagc gctggggact
    2651  tagtccataa agccactggt aaagagcctc cagtaggcag gcccgccttg
    2701  atgagtctta acgagtggac acccgggtag ccgcggacaa tgcccgacgg
    2751  gtttcaatgt ctacgatcat aaatgtcaac actcatccac aaggcagata
    2801  cgaaagagga gctgctcaac gctctatacg gggaagtgac gttaagggag
    2851  ctcgaggaat caaacctcgg cgtgctaacc ccccaccggg ccgaaaacaa
    2901  ggtggtaatg accccactgc tgccacccag aagtcaagga agaatcgcca
    2951  gcgtcctgaa acggttccgc cccacgaaac acacgggggg acttttattc
    3001  atagagaaga ttgtggtggt gttcacgccc cacatcccgg acgatgctgg
    3051  cggggaggta gaaatctggg tccacgacaa catgctacca cacctaaaca
    3101  gcgttgggcc ccgcgtaaga tttccgatga gcggagggcc caggttgata
    3151  gcattttatc ccccctactc gataccctta agttgtcaag tgaggggggc
    3201  gccccggagc tacttcattg tatcggagta ctccggcgtg aacttcgtcg
    3251  caggcgcgag cccgttcagc ctgtacataa tgtgggagcc gaagatagag
    3301  tgcgtagcgc acaactatct gatgaggccc cccaaagcga tgccgatttg
    3351  cagacatctg gtgaaggaca gtctgtcctc cctaacccta actcaggggg
    3401  cactgaaaag tgcaatgtcg aatcggtatg caacaactgc gaccgggctc
    3451  ccaccaccaa caagtggtga gcaggatatg gaggtagtgt cccatcctcc
    3501  aggctaaatt ggacacaaaa cggagctaga tttagtgttg caattgctag
    3551  accgttagcc actacgctag acagtgcgac aactgaggtc gtctatgacc
    3601  cacagggtgc catcctgtgc aatttccaac ccttggcaag ggtgatccta
    3651  gaggacgcgg gcattgactt gcctggggat gcttctagtt acataccgga
    3701  gtggttgata gacctctgtg taaggaaaca ggtgtgagac cggatcctgg
    3751  gaaacaggct gggatggtcc cgtaagttcg ggcggtgccc ttctggggta
    3801  accccaccgc cgacgtatca cctcacacgc tgttgaccga taagccgagg
    3851  tattggaacc gcaccactct ggaggttccc tctccttatg aggtggaggt
    3901  acagcacgcc ttaagtgtct gcgatccggt gttcacgtgc cggtggtccc
    3951  cctagttaac gtggtgccac agtctgtggt aggggcagct ggtcggattc
    4001  cagcagaaac caagtagcaa gtggacgttg ctacctcgag cctagagtca
    4051  tgggcccgca tcgacgtttg cggtaactca cagcgggcga taatagctgt
    4101  tgagaatgtc ggttcctgac ttagcgggag atgagcactt tctctcgcgc
    4151  cc