Sequence of DPV Plum pox virus

Plum pox virus partial polyprotein, coat protein region, genomic RNA, isolate APR 1

ACC No: FN424165

Dated: 2011-06-29 | Length: 996 | CRC: -2005896494

                
ID   FN424165; SV 1; linear; genomic RNA; STD; VRL; 996 BP.
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AC   FN424165;
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DT   29-JUN-2011 (Rel. 109, Created)
DT   29-JUN-2011 (Rel. 109, Last updated, Version 1)
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DE   Plum pox virus partial polyprotein, coat protein region, genomic RNA,
DE   isolate APR 1
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KW   .
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OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-996
RA   Varga A.;
RT   ;
RL   Submitted (29-JUN-2009) to the INSDC.
RL   Varga A., Centre for Plant Health, Canadian Food Inspection Agency, 8801
RL   East Saanich Road, Sidney, British Columbia, V8L 1H3, CANADA.
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RN   [2]
RA   Matic S., El Maghraby I., Law V., Varga A., Reed C., Myrta A., James D.;
RT   "Serological and molecular characterization of isolates of Plum pox virus
RT   El Amar strain to better understand its diversity, evolution, and unique
RT   geographical distribution";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .996
FT                   /organism="Plum pox virus"
FT                   /host="Prunus armeniaca cv. Balady"
FT                   /isolate="APR 1"
FT                   /mol_type="genomic RNA"
FT                   /country="Egypt:Sinro, Fayum Oasis"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .>996
FT                   /product="polyprotein"
FT                   /protein_id="CAZ66770.1"
FT                   /translation="ADEKEDDEEEVDAGRPLVTTTQQPIVTTTIQRTPITSATLQATQA
FT                   MFNPIFTPATTEPTTRTVPHTTTTTPPPFGVIGSEDTAPNASNALVQTGRDRDVDAGSI
FT                   GTFTVPRLKAMTSKLSLPKVKGKAIMNLNHLAFYSPAQVDLSNTRAPQSCFQTWYEGVR
FT                   RDYDVTDDEMSIILNGLMVWCIENGTSPNINGMWVMMDGETQVEYPIKPLLDHAKPTFR
FT                   QIMAHFSNVAEAYIEKRNYEKAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTPVRAREA
FT                   HIQMKAAALRNAQNRLFGLDGNVGTQEEDTERHTAGDVNRNMHNLLGMRGV"
FT   mat_peptide     1. .996
FT                   /product="coat protein"
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SQ   Sequence 996 BP; 304 A; 218 C; 245 G; 229 T; 0 other;

fn424165 Length: 996  29-JUN-2011  Type: N  Check: 3262  ..

       1  gctgatgaga aggaagacga tgaagaagaa gtggatgcag ggaggccttt
      51  agtcaccact acacagcagc caattgttac cacaacaatt cagcgaactc
     101  caataacgag tgcaacctta caagctacgc aggcaatgtt caatcccatc
     151  ttcactccag cgacgactga gccgaccact aggacagtgc ctcacacaac
     201  aactactaca cctcctcctt ttggagtgat cgggagtgag gataccgcac
     251  ccaatgcttc caatgcctta gttcaaacag gtagagacag agatgttgat
     301  gcgggttcca ttgggacttt cacagtgcca cgcttgaaag caatgacatc
     351  aaagctctca cttccaaagg tgaaagggaa agcaattatg aatttgaatc
     401  acctggcttt ctacagtcct gcacaggtgg atttgtcgaa cacgcgagct
     451  ccacagtcct gctttcaaac atggtatgaa ggagttagac gtgactatga
     501  cgtcactgat gatgaaatga gcattatttt gaatgggctt atggtctggt
     551  gcattgagaa tggaacatcc ccgaacatta atggaatgtg ggtcatgatg
     601  gatggggaga cacaagtgga gtatccaata aagccattgt tggatcatgc
     651  gaaacccact tttagacaaa ttatggcaca tttcagtaac gtggctgaag
     701  cgtatattga aaaacggaat tatgagaaag catacatgcc aaggtatggt
     751  attcagcgca acctgacgga ttacagcctc gccagatacg ccttcgattt
     801  ttatgaaatg acttcaacga cacctgtgcg tgcacgtgaa gctcatatac
     851  agatgaaggc agcggcattg agaaatgccc agaatcgtct atttggcttg
     901  gatggaaatg ttggaacaca agaagaggac acagagaggc acaccgctgg
     951  tgatgttaat cgcaacatgc ataacctcct cggtatgagg ggagtg