Sequence of DPV Plum pox virus

Plum pox virus partial polyprotein, coat protein region, genomic RNA, isolate PL 18

ACC No: FN424167

Dated: 2011-06-29 | Length: 996 | CRC: -1631232459

                
ID   FN424167; SV 1; linear; genomic RNA; STD; VRL; 996 BP.
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AC   FN424167;
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DT   29-JUN-2011 (Rel. 109, Created)
DT   29-JUN-2011 (Rel. 109, Last updated, Version 1)
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DE   Plum pox virus partial polyprotein, coat protein region, genomic RNA,
DE   isolate PL 18
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KW   .
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OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-996
RA   Varga A.;
RT   ;
RL   Submitted (29-JUN-2009) to the INSDC.
RL   Varga A., Centre for Plant Health, Canadian Food Inspection Agency, 8801
RL   East Saanich Road, Sidney, British Columbia, V8L 1H3, CANADA.
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RN   [2]
RA   Matic S., El Maghraby I., Law V., Varga A., Reed C., Myrta A., James D.;
RT   "Serological and molecular characterization of isolates of Plum pox virus
RT   El Amar strain to better understand its diversity, evolution, and unique
RT   geographical distribution";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .996
FT                   /organism="Plum pox virus"
FT                   /host="Prunus salicina cv. Balady"
FT                   /isolate="PL 18"
FT                   /mol_type="genomic RNA"
FT                   /country="Egypt:Sinro, Fayum Oasis"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .>996
FT                   /product="polyprotein"
FT                   /protein_id="CAZ66772.1"
FT                   /translation="ADEKEDDEEEVDAGRPLVTTTQQPIVTTTTQQTPTTNAALQATQA
FT                   MFNPIFTPATTEPATRTVPHTTTTTPPSFGVIGNEDIAPNASNALVQTGRDRDVDAGSI
FT                   GTFTVPRLKAMTSKLSLPKVKGKAIMNLNHLALYSPAQVDLSNTRAPQSCFQTWYEGVR
FT                   RDYDVTDDEMSIILNGLMVWCIENGTSPNINGMWVMMDGETQVEYPIKPLLDHAKPTFR
FT                   QIMAHFSNVAEAYIEKRNYEKAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTPVRAREA
FT                   HIQMKAAALRNAQNRLFGLDGNVGTQEEDTERHTAGDVNRNMHNLLGMRGV"
FT   mat_peptide     1. .996
FT                   /product="coat protein"
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SQ   Sequence 996 BP; 308 A; 214 C; 240 G; 234 T; 0 other;

fn424167 Length: 996  29-JUN-2011  Type: N  Check: 4637  ..

       1  gctgatgaga aggaagatga tgaagaagaa gttgatgcag ggaggccttt
      51  agtcaccact acacagcagc caattgttac cacaacaact cagcaaactc
     101  caacaacgaa tgcagcccta caagctacgc aggcaatgtt taatcccatc
     151  ttcactccag cgacgactga gccggccact aggacagtgc ctcacacaac
     201  aactactaca cctccttctt ttggagtgat cggaaatgag gatatcgcac
     251  ccaatgcttc caatgcctta gttcaaacag gtagagacag agatgtcgat
     301  gcgggttcca ttgggacttt cacagtgcca cgcttgaaag caatgacatc
     351  gaagctctca cttccaaagg tgaaagggaa agcaattatg aatttaaatc
     401  acctggcttt atacagtcct gcacaagtgg atttgtcaaa cacgcgagct
     451  ccacagtcct gctttcagac atggtatgaa ggagttagac gtgactatga
     501  cgtcactgat gatgaaatga gcattatttt gaatgggctt atggtttggt
     551  gcattgagaa tggaacatcc cctaatatta atggaatgtg ggtcatgatg
     601  gacggggaga cacaagtgga gtatccaata aagccattgt tggatcatgc
     651  gaaacccact tttagacaaa ttatggcaca tttcagtaac gtggctgaag
     701  cgtatattga aaaacggaat tatgagaaag catacatgcc aaggtatggt
     751  attcagcgca acctgacgga ttacagcctc gccagatacg cctttgattt
     801  ttacgaaatg acttcaacga cacctgtgcg tgcacgtgaa gctcatatac
     851  agatgaaggc agcggcattg agaaatgctc agaatcgttt atttggcttg
     901  gatggaaatg ttggaacaca agaagaggac acagagaggc acaccgctgg
     951  tgatgttaat cgcaacatgc ataacctcct cggtatgagg ggagtg