Sequence of DPV Plum pox virus

Plum pox virus partial polyprotein, coat protein region, genomic RNA, isolate APR 46

ACC No: FN424170

Dated: 2011-06-29 | Length: 996 | CRC: -36899803

                
ID   FN424170; SV 1; linear; genomic RNA; STD; VRL; 996 BP.
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AC   FN424170;
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DT   29-JUN-2011 (Rel. 109, Created)
DT   29-JUN-2011 (Rel. 109, Last updated, Version 1)
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DE   Plum pox virus partial polyprotein, coat protein region, genomic RNA,
DE   isolate APR 46
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KW   .
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OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-996
RA   Varga A.;
RT   ;
RL   Submitted (29-JUN-2009) to the INSDC.
RL   Varga A., Centre for Plant Health, Canadian Food Inspection Agency, 8801
RL   East Saanich Road, Sidney, British Columbia, V8L 1H3, CANADA.
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RN   [2]
RA   Matic S., El Maghraby I., Law V., Varga A., Reed C., Myrta A., James D.;
RT   "Serological and molecular characterization of isolates of Plum pox virus
RT   El Amar strain to better understand its diversity, evolution, and unique
RT   geographical distribution";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .996
FT                   /organism="Plum pox virus"
FT                   /host="Prunus armeniaca cv. Amar"
FT                   /isolate="APR 46"
FT                   /mol_type="genomic RNA"
FT                   /country="Egypt:El Amar, Nile Delta"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .>996
FT                   /product="polyprotein"
FT                   /protein_id="CAZ66775.1"
FT                   /translation="ADEKEDDEEEVDAGRPLVTTTQQPIVTTTTQQTPITRTTLQATQA
FT                   MFNPIFTPATTEPATRTVPHTTTTTPPSFGVIGNEDTAPNASNALVQTGRDRDVDAGSI
FT                   GTFTVPRLKAMTSKLSLPKVKGKAIMNLNHLASYSPAQVDLANTRAPQSCFQTWYEGVK
FT                   RDYDVTDDEMSIILNGLMVWCIENGTSPNINGMWIMMDGETQVEYPIKPLLDHAKPTFR
FT                   QIMAHFSNVAEAYIEKRNYEKAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTPVRAREA
FT                   HIQMKAAALRNAQNRLFGLDGNVGTQEEDTERHTAGDVNRNMHNLLGMRGV"
FT   mat_peptide     1. .996
FT                   /product="coat protein"
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SQ   Sequence 996 BP; 309 A; 214 C; 242 G; 231 T; 0 other;

fn424170 Length: 996  29-JUN-2011  Type: N  Check: 3116  ..

       1  gctgatgaga aggaagacga tgaagaagaa gtggatgcag ggaggccttt
      51  agtcactact acacagcagc caattgttac cacaacaact cagcaaactc
     101  caataacgag aacaacctta caagctacgc aggcaatgtt taatcccatc
     151  ttcactccag cgacgactga gccggccact aggacagtgc ctcacacaac
     201  aactactaca cctccttctt ttggagtgat tgggaatgag gataccgcac
     251  ccaatgcttc caatgcctta gttcaaacag gtagagacag agatgttgat
     301  gcgggttcca ttgggacttt cacagtgcca cgcttgaaag caatgacatc
     351  aaagctctca cttccaaagg tgaaagggaa agcaattatg aatttgaatc
     401  acctggcttc ttacagtcct gcacaagtgg atttggcgaa cacgcgagct
     451  ccacagtcct gttttcaaac atggtatgaa ggagttaaac gcgactatga
     501  cgtcactgat gatgaaatga gcattatttt gaatgggctt atggtctggt
     551  gcattgagaa tggaacatcc ccgaatatta atggaatgtg gatcatgatg
     601  gacggggaga cacaagtgga gtatccaata aagccattgt tggatcatgc
     651  gaaacccact tttagacaaa ttatggcaca tttcagtaac gtggctgaag
     701  cgtatattga aaaacggaat tatgagaagg catacatgcc aaggtatggt
     751  attcagcgca acctgacgga ttacagcctc gccagatacg cctttgattt
     801  ttacgaaatg acttcaacga cacctgtgcg tgcacgtgaa gctcatatac
     851  agatgaaggc agcggcattg agaaatgccc agaatcgttt atttggcttg
     901  gatggaaatg ttggaacaca agaagaggac acagagaggc acaccgctgg
     951  tgatgttaat cgcaacatgc ataacctcct cggtatgagg ggagtg