Sequence of DPV Plum pox virus

Plum pox virus partial polyprotein, coat protein region, genomic RNA, isolate APR 65

ACC No: FN424177

Dated: 2011-06-29 | Length: 996 | CRC: 350967896

                
ID   FN424177; SV 1; linear; genomic RNA; STD; VRL; 996 BP.
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AC   FN424177;
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DT   29-JUN-2011 (Rel. 109, Created)
DT   29-JUN-2011 (Rel. 109, Last updated, Version 1)
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DE   Plum pox virus partial polyprotein, coat protein region, genomic RNA,
DE   isolate APR 65
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KW   .
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OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-996
RA   Varga A.;
RT   ;
RL   Submitted (29-JUN-2009) to the INSDC.
RL   Varga A., Centre for Plant Health, Canadian Food Inspection Agency, 8801
RL   East Saanich Road, Sidney, British Columbia, V8L 1H3, CANADA.
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RN   [2]
RA   Matic S., El Maghraby I., Law V., Varga A., Reed C., Myrta A., James D.;
RT   "Serological and molecular characterization of isolates of Plum pox virus
RT   El Amar strain to better understand its diversity, evolution, and unique
RT   geographical distribution";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .996
FT                   /organism="Plum pox virus"
FT                   /host="Prunus armeniaca cv. Amar"
FT                   /isolate="APR 65"
FT                   /mol_type="genomic RNA"
FT                   /country="Egypt:El Amar, Nile Delta"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .>996
FT                   /product="polyprotein"
FT                   /protein_id="CAZ66782.1"
FT                   /translation="ADEKEDDEEEVDAGRPLVTTTQQPIVTTTTQQTPITSTTLQATQA
FT                   MFNPIFTPATTEPTTRTVPHTTTTTPPSFGVIGNEDTAPNASNAVVRTGRDRDVDAGSI
FT                   GTFTVPRLKAMTSKLSLPKVKGKAIMNLNHLAFYSPAQVDLSNTRAPQSCFQTWYEGVR
FT                   RDYDVTDDEMSIILNGLMVWCIENGTSPNINGMWVMMDGETQVEYPIKPLLDHAKPTFR
FT                   QIMAHFSNVAEAYIEKRNYEKAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTPVRAREA
FT                   HIQMKAAALRNAQNRLFGLDGNVGTQEEDTERHTAGDVNRNMHNLLGMRGV"
FT   mat_peptide     1. .996
FT                   /product="coat protein"
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SQ   Sequence 996 BP; 308 A; 214 C; 244 G; 230 T; 0 other;

fn424177 Length: 996  29-JUN-2011  Type: N  Check: 4134  ..

       1  gctgatgaga aggaagacga tgaagaagaa gtggatgcag ggaggccttt
      51  agtcaccact acacagcagc caattgttac cacaacaact cagcaaactc
     101  caataacgag tacaacctta caagctacgc aggcaatgtt taatcccatc
     151  ttcactccag cgacgactga gccgaccact aggacagtgc ctcacacgac
     201  aactactaca cctccttctt ttggagtgat cgggaatgag gataccgcac
     251  ccaatgcttc caatgcagta gttcgaacag gtagagacag agatgttgat
     301  gcgggttcca ttgggacttt cacagtgcca cgcttgaaag caatgacatc
     351  aaagctctca ctaccaaagg tgaaagggaa agcaattatg aatttgaatc
     401  acctggcttt ctacagtcct gcacaagtgg atttgtcgaa cacgcgagct
     451  ccacagtcct gctttcaaac atggtatgaa ggagttagac gtgactatga
     501  cgtcactgat gatgaaatga gcattatttt gaatgggctt atggtctggt
     551  gcattgagaa tggaacatcc ccgaatatta atggaatgtg ggtcatgatg
     601  gatggggaga cacaagtgga gtatccaata aagccattgt tggatcatgc
     651  gaaacccact tttagacaaa ttatggcaca tttcagtaac gtggctgaag
     701  cgtatattga aaaacggaat tatgagaaag catacatgcc aaggtatggt
     751  attcagcgca acctgacgga ttacagcctc gccagatacg cctttgattt
     801  ttacgaaatg acttcaacga cacctgtgcg tgcacgtgaa gctcatatac
     851  agatgaaggc agcggcattg agaaatgccc agaatcgttt atttggcttg
     901  gatggaaatg ttggaacaca agaagaggac acagagaggc acaccgctgg
     951  tgatgttaat cgcaacatgc ataacctcct cggtatgagg ggagtg