Sequence of DPV Tomato leaf curl New Delhi virus
Tomato leaf curl New Delhi virus [Pakistan:Solanum:2009] complete segment DNA-B, clone MS5
ACC No: FN435312
Dated: 2011-08-07 | Length: 2696 | CRC: 959230763
ID FN435312; SV 1; circular; genomic DNA; STD; VRL; 2696 BP.
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AC FN435312;
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DT 07-AUG-2011 (Rel. 109, Created)
DT 07-AUG-2011 (Rel. 109, Last updated, Version 1)
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DE Tomato leaf curl New Delhi virus [Pakistan:Solanum:2009] complete segment
DE DNA-B, clone MS5
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KW .
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OS Tomato leaf curl New Delhi virus [Pakistan:Solanum:2009]
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2696
RA Shahid M.S.;
RT ;
RL Submitted (07-AUG-2009) to the INSDC.
RL Shahid M.S., Agriculture Biotechnology Division, National Institute for
RL Biotechnology and Genetic Engineering, NIBGE, Jhang Road, Faislabad, 38000,
RL PAKISTAN.
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RN [2]
RA Shahid M.S., Nahid N., Briddon R.W., Mansoor S.;
RT "Synergism with betasatellite and prevalent strains influence symptoms
RT induced by Tomato leaf curl New Dehli virus, a bipartite begomovirus";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2696
FT /organism="Tomato leaf curl New Delhi virus
FT [Pakistan:Solanum:2009]"
FT /segment="DNA-B"
FT /host="Solanum lycopersicum"
FT /mol_type="genomic DNA"
FT /country="Pakistan:Faisalabad"
FT /isolation_source="host leaf"
FT /collected_by="Muhammad Shafiq Shahid"
FT /clone="MS5"
FT /db_xref="taxon:665442"
FT CDS 405. .1250
FT /gene="nsp"
FT /product="nuclear shuttle protein"
FT /function="movement"
FT /protein_id="CBA13474.1"
FT /translation="MVFPLPHISYPSQMAFPSPYSTPRRSGYPFNRTYNGNKSFRLWKT
FT RKYQNWKRYRSTHSIARSPTELFGDPISKQYTRKEICETQEGSEYLLHNNRYMTSYVTY
FT PSKTRTGTDNRVRSYIKLKSLNISGTFAVRKSDLMTEVVQTNGLYGVMSIVVVRDKSPK
FT IYSATQPLIPFVELFGSVNACRGSLKVAERHHERFVLLNQTSIVVNTPHSNAIKKFCIR
FT NCIPRTYTTWVTFKDEEEDSCTGRYSNTLRNAIILYYVWLSDVSSQVDLYSNVILNYIG
FT "
FT CDS complement(1276. .2154)
FT /gene="bc1"
FT /product="movement protein"
FT /function="movement"
FT /protein_id="CBA13475.1"
FT /translation="MSIGNDGMGMGVGGYIQSERVEYALTNDAAEVTLSFPSMFEQKLS
FT QLRNRCMKIDHVVLEYRSQVPINAVGHVVVEIHDMRLTEGDTKQAEFTIPIKCNCNLHY
FT YSSSFFSLKDKNPWRVEYRVENTNVVNGVHFCKMLGKLKLSSAKHSTDVEFRPPKIEIQ
FT TKEFTMNDIDFWSVGSKPQTRRLVDGSRLMGHSSRSLRVPYLAIGPNESWASRSEIGLS
FT SVTSRPYNNLSGLDDSAIDPGPSASQAGSITREEIADIITEDCRAMYKIQCKCSSIEER
FT VINFKPNLFNK"
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SQ Sequence 2696 BP; 776 A; 601 C; 508 G; 811 T; 0 other;
fn435312 Length: 2696 07-AUG-2011 Type: N Check: 4773 ..
1 accgaaaggc cgcgaaaatt ttgaccccct tatcctgacc gttgatgcgt
51 aatcattgca cgccgttatc cgtccgattt gcaacacgtg tatcccacta
101 acagacttta tggaaaataa atgtgtgaat gcgtctcttt tctgcatatg
151 tgttccccat atgtctttat cgtacttcta ttatatgcgt ctgtggtccc
201 cccgcattat ataaagtctt tcacataaat caaattgcct tctttgctat
251 gtatatattg atcggtcgag atcaaaatta atatgttgcg aacatatccg
301 tcgttcgatc ttatgagata tgctttaatt caaacaatac ttgtttgaat
351 tttatgcacg ctgtacaata ctagtttata aaactgctac atatgtgaca
401 ttacatggtg tttccgttgc cacacatttc ctatcccagc caaatggcgt
451 ttccctctcc ttattccacg cctcgtcgtt cgggttaccc attcaacaga
501 acatacaacg gaaacaagag tttccgcttg tggaagaccc ggaagtatca
551 aaactggaag cgctatcgca gtacccattc catagcacgt tctccaaccg
601 aactgtttgg cgatccaatc tccaaacaat atacgcgtaa ggaaatctgt
651 gaaacacagg agggttcgga gtatctgctg cacaacaatc gttacatgac
701 gtcatatgtc acgtatccat caaaaacaag aactggaacg gacaaccgcg
751 ttcgttccta tatcaagcta aagagtctga acatatctgg gacatttgct
801 gttcgtaaat ctgacttgat gaccgaagtg gtgcaaacaa atggtctata
851 cggagtgatg tctatagttg tagtccgcga taaatctcca aagatttatt
901 ctgcgaccca acctttaata ccgtttgttg agctatttgg atctgttaat
951 gcttgcaggg gcagtctgaa agtggcagaa cgccaccatg aacgcttcgt
1001 acttctgaat caaacatcca tcgttgtcaa taccccacat tccaacgcta
1051 tcaagaaatt ctgcattcgt aactgcatcc caagaactta cacaacctgg
1101 gtaacgttca aggacgaaga agaagatagc tgtactggac gatattctaa
1151 caccctccga aatgcaatta tattatatta tgtatggtta agcgatgtat
1201 cctcacaagt cgatctatac agcaatgtaa ttcttaatta cattggataa
1251 tatataaaaa tgcagaagaa acatcttatt tattgaataa atttggctta
1301 aaatttatta cacgctcttc gatactggag catttacatt ggattttata
1351 cattgctcta cagtcttccg taattatatc tgcaatctct tcccttgtaa
1401 tactccccgc ctgtgatgcc gatggacctg gatcaattgc cgaatcatcc
1451 aatccgctca gattattata tggtctgctg gtgacggacg aaagtccgat
1501 ctccgatctg cttgcccatg attcgttcgg acctatagcc agatagggta
1551 cccgtaacga tcttgaacta tgtcccatta accttgaacc atctacaaga
1601 cgccttgttt gtggtttgga acccacagac cagaaatcaa tgtcgttcat
1651 agtgaattcc ttggtctgta tttctatctt tggtggtcgg aattcgacgt
1701 cagtcgaatg tttagccgac gacagcttca atttccctag catcttacag
1751 aagtgtaccc cattcacgac gtttgtgttc tccactcggt attcaactct
1801 ccaaggattc ttatccttga gagagaagaa tgaggaagag tagtagtgca
1851 ggttgcaatt gcatttgatc ggaattgtga attccgcttg ttttgtgtcc
1901 ccctccgtca atctcatgtc gtgtatctct accacgacat gaccaacagc
1951 attaattgga acctgactgc gatattccag aactacgtga tctattttca
2001 tgcatctatt cctcaactgg ctaagcttct gctcgaacat ggatggaaat
2051 gacaaggtaa cttctgcagc atcgtttgtg agagcgtact caacgcgctc
2101 agattgaata tacccaccta ctcccatacc cataccatca tttcctattg
2151 acatattggc cgcgcagcgc aaaacccact gaaacacaga aggacagact
2201 acgatcaaag aaaccccgac gaagaagaaa ccctagcaaa caacgaagtt
2251 gttttgcaaa gaacggatgt agatggtttt ataatgctat tgcatgtcat
2301 gtctatgtca taccaattac cctaaaatga acggcacata tttttctacg
2351 aaaaaggagt tgtgcatgca tatgggatgt ctgtttattt acggtataaa
2401 ttggaagccc aatttattta attgggctga agtttaaatt cagaagaagt
2451 ccatgaaatt ggcccagcat ccaggtccat tgttaaaatg acatcgtttg
2501 tgtgttattg tgtgtataga agttagagag aagcagcagt ttctctctct
2551 agaactcatc gggtgtctct caacttatct atataattgg tgtctggagt
2601 cctatatata ggtaagacac catatggcat tattgtaatt gtgaaaagaa
2651 aattacttta attcaaattc cctatagcgg cctttcgtat aatatt