Sequence of DPV Southern rice black-streaked dwarf virus
Southern rice black-streaked dwarf virus segment 5, isolate HN, complete segment, genomic RNA
ACC No: FN563993
Dated: 2010-11-18 | Length: 3167 | CRC: 62826329
ID FN563993; SV 1; linear; genomic RNA; STD; VRL; 3167 BP.
XX
AC FN563993;
XX
DT 18-NOV-2010 (Rel. 106, Created)
DT 18-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE Southern rice black-streaked dwarf virus segment 5, isolate HN, complete
DE segment, genomic RNA
XX
KW complete viral segment, complete genome.
XX
OS Southern rice black-streaked dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC unclassified Fijivirus.
XX
RN [1]
RP 1-3167
RA Adams M.J.;
RT ;
RL Submitted (04-NOV-2009) to the EMBL/GenBank/DDBJ databases.
RL Adams M.J., Rothamsted Research, Department of Plant Pathology and
RL Microbiology, Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN [2]
RA Wang Q., Yang J., Zhou G.H., Zhang H.M., Chen J.P., Adams M.J.;
RT "The Complete Genome Sequence of Two Isolates of Southern rice
RT black-streaked dwarf virus, a New Member of the Genus Fijivirus";
RL J. Phytopathol. 158(11-12):733-737(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .3167
FT /organism="Southern rice black-streaked dwarf virus"
FT /segment="5"
FT /isolate="HN"
FT /mol_type="genomic RNA"
FT /country="China:Hainan, Dongao city"
FT /collection_date="2003"
FT /db_xref="taxon:519497"
FT CDS 16. .2835
FT /product="P5"
FT /note="ORF5"
FT /protein_id="CBH31255.1"
FT /translation="MTYLKVKMTTDPFEMFLKKVVFNPTNEIRILNHEQADNTLLTTLM
FT IIHDFEDTPTRDSILPQIVNEEKAEFDRTIESILEEVSDAFVANYHKILEENAKLGNPL
FT APNYKNVVSVETCIPGLEKLFVDRERWELFTRLYRLDRKMSQKYPLEKMLKGNFLNISI
FT SDETYYEYVSAMIIVFEVFLCVITVNSDYGGLIFSVLNLMSGGHNYIPILGLLLHAIVQ
FT AVKIYLDKSAANQIEEKTTSYVDKVTNNDVKDVMIDDTMFIFVDKPKEPIFQNFDISLK
FT VHTHKSFAFQPFKTGFNALLTKIIRIHKIKGEILKVGYIDGISRDELIGASGKKLSYFE
FT RHAIGIKYDQETKTLFISHPILRDAFERLNKLSLLHDNLLLKDDFANIPSDFFTVDFNE
FT PDSVSDYVVPFLNNADLKFSTQMSYNWRSINTEKRPYCFLKEGTSMNFYDPIFECFFPN
FT HFIKIVKKDAITIDPTKVVTEDDMIHFGRLVERHEDLTYNKTTAYSILKFLNENCHSCG
FT CSEYFANFVSDYLTSIDVLNHMKDSKLSKVEYHLKQEYENLFKKTKRQELSKTPIAEHS
FT DFLSQCAYNESFFDIDFCFLEDGDCHSLVIRFAKRKPYFRFKDKKLEKLNVLSLYDLVV
FT NCNHGELSSSSRVGWNLVDIDNMGSDDNLNRTIRRTNSKPRHFTYDLMMITFTGSVTQY
FT LIPEWLGESLTVYEEKHEGARLFEKSSLFSTLSCIPATFLANHILIECLEKSSNKLISF
FT MDGVISAMSTSIEFSTFKNTMLNNLKRCTQASEMNVAKQSPIAGTSKNKSFRSYLRSSR
FT PNHVYDALSYCISKKQNGLFTSEEMCMSYNLRSFGKVGVDYSNGELSYDISSREELYNN
FT HPCALRLRNLGHFVFGKHFRCKVCRNNYGTSFELSLCQLGHQETAIEAVRSNTITSQIR
FT AKLQPTTAR"
FT CDS 2459. .3076
FT /product="hypothetical protein"
FT /note="ORF5b"
FT /protein_id="CBH31256.1"
FT /translation="MSMTRCPIVSPRNRTGCSHQKKCACLIISDHLEKWELTIATVNCH
FT MISRQEKSCTTIIPVRFDLEISDILSLENILDAKYVATITELALNFPCVNWDIKKQQLK
FT QFDPTQSLVKLEQNFNQLQRDDKLHFNCCYNYPTLHILNRILNVSKDVIPFLFDHNHNA
FT NNKTMSDLSSTLNNCRDMKVSERHHLLGTLLFGSTLGVILHV"
XX
SQ Sequence 3167 BP; 1000 A; 620 C; 568 G; 979 T; 0 other;
fn563993 Length: 3167 18-NOV-2010 Type: N Check: 7362 ..
1 aagttttttt cactcatgac atatttgaaa gtgaagatga ccacagatcc
51 tttcgaaatg tttttgaaaa aagtggtttt caacccaacg aacgaaattc
101 gaattctcaa ccacgaacaa gcagacaaca ctcttttgac cacactgatg
151 attattcacg actttgaaga cacccccact cgtgactcaa ttttgcccca
201 aattgtcaat gaagaaaaag ccgaattcga ccgaactatt gaatccattc
251 ttgaagaagt tagcgatgcc tttgttgcta attatcacaa aattctcgaa
301 gaaaacgcga aattgggtaa ccctcttgct ccaaattaca aaaacgtcgt
351 gtctgtagaa acatgtattc caggtcttga aaaacttttt gttgatcgcg
401 aaagatggga actgtttacc cgtttgtatc ggctagatcg aaaaatgagt
451 caaaaatatc ctctagagaa gatgctaaaa ggcaatttcc ttaacatttc
501 catttccgac gaaacttatt atgagtacgt ttccgctatg atcatagttt
551 ttgaagtgtt tctttgtgtt ataactgtca acagtgatta cggtggcttg
601 atctttagtg ttttgaactt gatgagcggc ggacataact acattcctat
651 tcttggccta cttttacatg ctattgttca agctgtaaaa atttatttgg
701 ataaatcagc tgcgaatcaa attgaagaaa agactacttc ctacgtagac
751 aaagtgacaa acaacgacgt taaagacgtt atgattgatg acaccatgtt
801 tatttttgtt gataaaccga aagaaccaat attccaaaat tttgacatca
851 gtctaaaagt tcatactcac aaatcatttg cttttcaacc ttttaaaacc
901 ggtttcaatg ctcttttaac taaaatcatt cgtattcaca aaatcaaagg
951 tgaaattctc aaagttggtt acattgatgg aatcagtcgt gacgaattga
1001 ttggcgcatc aggaaagaaa ctctcgtatt ttgaaagaca tgccattgga
1051 attaagtatg atcaggaaac caagacattg ttcatcagtc accccatttt
1101 acgagatgct tttgagcgtt tgaacaagct ttcgctattg catgataacc
1151 ttctgttgaa agacgacttc gctaacattc cgtctgattt tttcactgtt
1201 gattttaatg agccagattc tgtcagtgat tacgtagttc ccttcttgaa
1251 taatgctgat ttgaagtttt ccactcaaat gtcttacaac tggagaagca
1301 ttaacacgga aaaaagacct tactgcttct tgaaagaagg aactagcatg
1351 aacttttacg atccaatttt tgaatgcttt tttccaaacc atttcatcaa
1401 aattgtcaaa aaagacgcaa ttaccattga tcctacgaaa gttgtaactg
1451 aagatgacat gatccatttt ggacggttgg ttgaaagaca tgaagatttg
1501 acgtacaaca agactactgc ttattccatt ttgaaatttt tgaatgaaaa
1551 ttgccacagt tgtggttgtt ctgaatattt cgccaatttc gtttctgatt
1601 acttaacatc aatcgacgtt cttaatcaca tgaaggattc aaaattatca
1651 aaggtcgaat atcatctcaa gcaggaatac gaaaacttgt tcaagaagac
1701 aaaaagacaa gagctttcaa aaacgccgat tgctgaacat tcagatttcc
1751 tctctcaatg cgcatataac gagtctttct tcgatatcga tttttgcttc
1801 ctggaagatg gtgactgtca ttcactcgtc attcgattcg ctaaacgcaa
1851 accttatttt cgcttcaaag acaaaaaatt ggaaaagctc aacgttttgt
1901 ccctgtacga tcttgttgtg aattgtaatc acggagaact ttcttcatct
1951 agcagagttg gatggaattt ggttgacatt gacaacatgg gatcagatga
2001 taacctcaat cgtaccattc gtcgaactaa cagtaaacca cgccatttta
2051 cttacgatct aatgatgatt accttcactg gctcagtcac acaatacctc
2101 atacctgaat ggcttggaga aagtttgacg gtttacgaag aaaaacatga
2151 aggcgctcgt ctttttgaaa aatctagctt gttttcaact ttaagctgca
2201 ttccggcaac gtttttagca aatcacatac taatcgaatg tttagaaaaa
2251 agctcgaaca aactgatttc tttcatggat ggtgtgatca gtgccatgtc
2301 cactagcatc gaattctcga ctttcaaaaa taccatgctc aacaacttga
2351 aaaggtgtac acaggcttct gagatgaacg ttgcgaaaca gtctccaatc
2401 gcaggaacta gcaaaaacaa gtcttttcgt tcctatttac gatcttctcg
2451 accaaaccat gtctatgacg cgttgtccta ttgtatctcc aagaaacaga
2501 acgggttgtt cacatcagaa gaaatgtgca tgtcttataa tctcagatca
2551 tttggaaaag tgggagttga ctatagcaac ggtgaattgt catatgatat
2601 ctcgtcaaga gaagagctgt acaacaatca tccctgtgcg cttcgactta
2651 gaaatctcgg acattttgtc tttggaaaac attttagatg caaagtatgt
2701 cgcaacaatt acggaactag ctttgaactt tccctgtgtc aattgggaca
2751 tcaagaaaca gcaattgaag cagttcgatc caacacaatc actagtcaaa
2801 ttagagcaaa acttcaacca actacagcgc gatgataagc ttcattttaa
2851 ttgttgttat aattatccta ctttacacat attaaaccgt attttaaatg
2901 tttctaaaga cgtaattcca tttttatttg atcacaatca caacgctaac
2951 aataaaacga tgtctgactt atcttctacg cttaacaatt gtcgtgatat
3001 gaaagtttct gagagacatc acttacttgg aactttactt ttcggaagca
3051 cgctaggagt tatacttcat gtttgagggt gtgttatccc tggctgcaag
3101 cgggaggcgc gtgaacaggt gttccacgtc ttcttagatg cgggggggag
3151 tgaatacagc tgatgtc