Sequence of DPV Southern rice black-streaked dwarf virus
Southern rice black-streaked dwarf virus segment 6, isolate HN, complete segment, genomic RNA
ACC No: FN563994
Dated: 2010-11-18 | Length: 2651 | CRC: 2108280251
ID FN563994; SV 1; linear; genomic RNA; STD; VRL; 2651 BP.
XX
AC FN563994;
XX
DT 18-NOV-2010 (Rel. 106, Created)
DT 18-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE Southern rice black-streaked dwarf virus segment 6, isolate HN, complete
DE segment, genomic RNA
XX
KW complete viral segment, complete genome.
XX
OS Southern rice black-streaked dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC unclassified Fijivirus.
XX
RN [1]
RP 1-2651
RA Adams M.J.;
RT ;
RL Submitted (04-NOV-2009) to the EMBL/GenBank/DDBJ databases.
RL Adams M.J., Rothamsted Research, Department of Plant Pathology and
RL Microbiology, Harpenden, Herts AL5 2JQ, UNITED KINGDOM.
XX
RN [2]
RA Wang Q., Yang J., Zhou G.H., Zhang H.M., Chen J.P., Adams M.J.;
RT "The Complete Genome Sequence of Two Isolates of Southern rice
RT black-streaked dwarf virus, a New Member of the Genus Fijivirus";
RL J. Phytopathol. 158(11-12):733-737(2010).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2651
FT /organism="Southern rice black-streaked dwarf virus"
FT /segment="6"
FT /isolate="HN"
FT /mol_type="genomic RNA"
FT /country="China:Hainan, Dongao city"
FT /collection_date="2003"
FT /db_xref="taxon:519497"
FT CDS 82. .2463
FT /product="P6"
FT /function="putative supressor of RNA silencing"
FT /note="ORF6"
FT /protein_id="CBH31257.1"
FT /translation="MSTNLTNIAMLKKRLQRRVTTNTSVNNEVENTPSQPLEPVANASS
FT SSESSVITKRYARPSNKISSSSTVAENSNDTKLLHNLISAAPNASVLMKPNTDVLNLSK
FT TQTILPSLVVNATCQLKLKDLNDWKGFVLCHPNSPQSNVSATLYTGNKLFVVFQKKNVQ
FT NDDSEFKMMMKDKAFTFLDSNVFKPKSKEFMTSLYNASSNVIITDSELEFDDLSNLKIC
FT FSPSDIPSLTSLHKRMIKFSFWPSNILIPHLTEIVNHFGTLKLAHFEDIELDSSNAESS
FT LFIVSNNKFSEQSENVLQFIDAQPNSQLLINKINDMNERFGSLANGTHFMIGTVPSKSE
FT LDDDKKKNLFGSNHVILMVNPVNILFDTTQLYFLLFSYLNKFVMQASIVQVFTTDLVNH
FT GDMFSVAFNVIKCFYDSISCTLINHVIEDEVDVQKRVLMTVDDLSDDIKEFIPPNATST
FT EDSETDNKRVENEIKALIKFDSQKQQTSTSKTLEVQEQQRSWADVVERTECDVEKTSSI
FT ALNDVIKNMTYEDFVTNAKLIEFARRYSDETGEAHKLKVEMTRLSEENGQLLNAIKHNE
FT ACIIQNNEEILNLREQSDRLTISLKQLDDAYSELVKEKDEVKTERDAFEAKLQEANKVI
FT VEKTTRLNEAIDELEKAEDRNSSVVEEEPDNTEHRNDGFSLFGECLDKVRLLKNKYPHL
FT YSGVDANFGDLTSLLRMLLIKIDSITSLCDANVTVSENQWSAYGLCSLTSSTHDNATTE
FT MLSVNQVGLMNFQVANFTNIVYDVFFYNMFIKFLWQLISE"
XX
SQ Sequence 2651 BP; 857 A; 551 C; 465 G; 778 T; 0 other;
fn563994 Length: 2651 18-NOV-2010 Type: N Check: 5301 ..
1 aagttttttg agtctgagat actgttatcc attgcgaacc tgagaacgag
51 tttaacagaa tctcacaccc agaaaacaac gatgtctacc aacctcacga
101 acatagccat gctgaaaaaa cgattgcaaa gacgagtcac cactaacacc
151 tctgtcaaca atgaagtcga gaacactcca tcccaaccac tcgaacctgt
201 tgcgaacgct tcttcttctt cagaaagctc cgtcattacc aaacgttacg
251 cccgtccgtc taacaaaatt tcttcttcat ctacagttgc cgagaattca
301 aatgatacga aactgctcca caacttgatt tccgcagcgc caaatgcttc
351 tgtgcttatg aaaccaaaca ctgacgtact caatctgtcc aaaactcaaa
401 ctatccttcc atctttagta gtgaatgcaa cctgtcaact gaaattgaaa
451 gatttgaatg attggaaagg ttttgtactg tgtcatccaa attctcccca
501 atctaacgtt tctgctactt tgtacaccgg aaataaactg tttgtcgtat
551 tccagaaaaa gaacgttcaa aatgatgatt ctgaatttaa gatgatgatg
601 aaagataaag ctttcacttt ccttgattca aatgttttca aaccgaaatc
651 gaaagaattc atgacttctc tttacaacgc gtcttcaaat gtgatcatca
701 ccgactctga attagaattt gatgatttga gcaacttgaa aatctgcttt
751 tccccttccg acattccgag tttgacttct cttcacaaaa gaatgatcaa
801 atttagtttt tggccaagta acattttgat ccctcatctc actgaaattg
851 tcaaccattt cggaactttg aaacttgcac attttgaaga cattgaactt
901 gactcttcaa acgcggaatc ttctctcttt atcgtatcaa acaacaagtt
951 ttctgaacaa agtgagaacg tacttcaatt tatcgatgct caaccaaatt
1001 cacaacttct gatcaacaaa attaatgaca tgaacgaacg ttttggttca
1051 ctggcaaacg gcactcattt catgattgga actgtccctt cgaaatctga
1101 acttgacgat gataagaaaa agaacttgtt tggatcaaat cacgtcatcc
1151 tgatggtcaa tcccgttaac attctttttg acacaaccca attgtacttc
1201 ttgctgtttt cttatctgaa taaatttgta atgcaagctt caattgttca
1251 agttttcaca actgatctgg tcaaccatgg tgatatgttt tcagtagctt
1301 tcaatgttat caaatgcttc tacgattcca tcagttgcac cctcattaat
1351 cacgtcattg aagatgaagt tgacgttcaa aaacgtgtgt tgatgacagt
1401 tgatgatttg tctgatgaca ttaaagagtt tattcctccc aacgccacat
1451 ctacggaaga ttctgaaact gacaacaagc gtgtagaaaa cgaaattaag
1501 gcattgatca aattcgactc tcaaaagcaa caaacatcaa cgtcaaaaac
1551 actagaagtt caagaacagc aacgttcatg ggccgacgta gttgaaagaa
1601 cagaatgcga tgtcgaaaag acttcttcca ttgctcttaa tgatgtgatc
1651 aaaaacatga catacgaaga ttttgtcacg aatgctaagt tgatcgaatt
1701 tgcaagacga tactctgatg aaacaggcga agctcacaaa ttgaaagtcg
1751 aaatgacacg cttatcagaa gaaaatggtc aacttttaaa tgccatcaaa
1801 cacaacgaag cttgcatcat ccaaaacaat gaagaaattt tgaatttgag
1851 agaacaaagt gatcgtttga ctatcagctt gaaacaactt gacgacgctt
1901 attctgaact ggtgaaagag aaagatgaag ttaaaactga aagagatgcg
1951 tttgaagcga aattgcaaga agcgaataaa gtgatcgttg agaaaactac
2001 tcggttgaac gaagcgattg atgagttgga aaaagctgaa gacagaaaca
2051 gttccgttgt cgaagaagaa cctgacaata ctgaacatcg taacgacggt
2101 ttctcgcttt ttggtgaatg tctcgataaa gtgcgtcttc tcaaaaacaa
2151 atatcctcat ctttattctg gcgtagatgc taactttggc gatctgactt
2201 cactattgcg tatgcttttg atcaagattg atagtatcac ttcactttgc
2251 gatgcgaacg ttactgtgtc tgagaaccaa tggagcgcgt atggattatg
2301 tagtttgact tcatcaacgc atgacaatgc cacaactgaa atgctgtctg
2351 taaatcaagt cggtttaatg aatttccaag ttgcgaactt caccaacatc
2401 gtttatgacg tcttttttta caacatgttc attaagtttt tgtggcaact
2451 tatttcagag taatgaacaa ataatcacga atgacatctc gcattaacat
2501 ctgcgcacta ccacctagct gatttgagtt attataccat ctttaacgga
2551 cagagatctc atgttgaact ggattatcgg tattcgagat ggtaagtcag
2601 ttttctctat tcgtcacctt gctcggcaag agactcaaat cagctgatgt
2651 c