Sequence of DPV Cotton leaf curl Burewala virus
Cotton leaf curl Burewala virus segment A, complete sequence, clone L2-RCA-AI-F
ACC No: FN645929
Dated: 2012-02-23 | Length: 2759 | CRC: -1600383337
ID FN645929; SV 1; circular; genomic DNA; STD; VRL; 2759 BP.
XX
AC FN645929;
XX
DT 08-FEB-2010 (Rel. 103, Created)
DT 23-FEB-2012 (Rel. 111, Last updated, Version 2)
XX
DE Cotton leaf curl Burewala virus segment A, complete sequence, clone
DE L2-RCA-AI-F
XX
KW .
XX
OS Cotton leaf curl Burewala virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2759
RA Thompson J.R.;
RT ;
RL Submitted (07-DEC-2009) to the INSDC.
RL Thompson J.R., International Centre for Genetic Engineering and
RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV),
RL ITALY.
XX
RN [2]
RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.;
RT "A survey of geminiviruses and associated satellite DNAs in the
RT cotton-growing areas of northwestern India";
RL Arch. Virol. 0:0-0(2011).
XX
FH Key Location/Qualifiers
FH
FT source 1. .2759
FT /organism="Cotton leaf curl Burewala virus"
FT /segment="A"
FT /host="Gossypium hirsutum"
FT /mol_type="genomic DNA"
FT /country="India:Punjab"
FT /collection_date="Sep-2007"
FT /clone="L2-RCA-AI-F"
FT /db_xref="taxon:620894"
FT CDS 132. .488
FT /gene="AV2"
FT /product="pre-coat protein"
FT /db_xref="GOA:D3HIQ8"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:D3HIQ8"
FT /protein_id="CBJ17720.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL
FT ILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ
FT KAQDVQDVQKSRCS"
FT CDS complement(283. .807)
FT /gene="AC5b"
FT /product="AC5b protein"
FT /db_xref="InterPro:IPR006892"
FT /db_xref="InterPro:IPR013671"
FT /db_xref="UniProtKB/TrEMBL:D3HIQ9"
FT /protein_id="CBJ17721.1"
FT /translation="MNILHSRRTGLIIKHIKYLSKILRFINRSTISNQEKHHTIRVILR
FT LNVLIHPDLTQHINRLNTKSLTNSMGQPSTTSNITNTHYFTYMLNIMSGLKRLNLTWTF
FT TSSRNIWTSVHPVHPGLSVHGPVRPCFCFGDADNGGSSTAHIWAVEVETAAYLRSGRGN
FT DYICWSLRHNS"
FT CDS 292. .1062
FT /gene="AV1"
FT /product="coat protein"
FT /db_xref="GOA:D3HIR0"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:D3HIR0"
FT /protein_id="CBJ17722.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(1059. .1463)
FT /gene="AC3"
FT /gene_synonym="ren"
FT /product="replication enhancer protein"
FT /db_xref="GOA:D3HIR1"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:D3HIR1"
FT /protein_id="CBJ17723.1"
FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI
FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQVLKYLNNLGIVSINN
FT VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY"
FT CDS complement(1505. .2596)
FT /gene="AC1"
FT /gene_synonym="rep"
FT /product="replication initiator protein"
FT /db_xref="GOA:D3HIR2"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:D3HIR2"
FT /protein_id="CBJ17724.1"
FT /translation="MAPPKRFKVQAKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK
FT LCRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH
FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYNEFLNEEKNTALKNWALKNAIFITLEGPL
FT YSASNQSTAQGSEETQQEEENRS"
FT CDS complement(2242. .2682)
FT /gene="AC4"
FT /product="regulatory protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:D3HIR3"
FT /protein_id="CBJ17725.1"
FT /translation="MPFGDTINCIQSPIPRVKAHQLSLIDQSQWLPPNVLKYKPKTISS
FT LIHSAHSLKRKHFPKFKPSTHPRIKNTSNSAESYTKMGALISMCSSSSRANSSARITDS
FT STWYPQPGQHISIRTFRELNQAQMSRPTSTRTGTLSSGESFR"
XX
SQ Sequence 2759 BP; 718 A; 543 C; 650 G; 848 T; 0 other;
fn645929 Length: 2759 23-FEB-2012 Type: N Check: 3404 ..
1 accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg
51 gccaatcata tgacgcgctc aaagcttaaa aaattctccc gcgtattata
101 agtacttcgt tgctaagtat gcgtttgaaa aatgtgggat ccactgttaa
151 atgagttccc cgacaccgtt cacggtttta ggtgtatgtt agcagttaaa
201 tatttgcagt tagtagagaa aacttactct cctgatacat tgggttacga
251 tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag
301 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg
351 tctcaacttc gacagcccat atgtgagccg tgctgctgcc cccattgtcc
401 gcgtcaccaa agcaaaagca tgggcgaaca ggcccatgaa cagaaagccc
451 aggatgtaca ggatgtacag aagtccagat gttcctagag gatgtgaagg
501 tccatgtaag gttcagtcgt ttgagtccag acatgatatt cagcatatag
551 gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat
601 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat
651 ctggatggat gagaacatta agacgaagaa tcacacgaat agtgtgatgt
701 ttttcttggt tagagatcgt agacctgttg ataaacctca agattttgga
751 gaggtattta atatgtttga taatgagccc agtacggcga ctgtgaagaa
801 tgttcatcgt gataggtatc aagttctgcg caaatggtat gcaactgtca
851 ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt
901 agagttaata attatgttgt gtataaccag caggaagctg gcaagtatga
951 gaatcattct gagaatgctt taatgttgta tatggcgtgt actcacgcct
1001 ctaacccagt gtatgctacc ttgaagatac ggatctactt ctatgattcc
1051 gtgacaaatt aataaatatt gaattttatt gaagatgatt ggtctacaaa
1101 tacaacatgt tgtaatacat tccataatac atgatcaact gctctaacta
1151 cattattaat actgacaatt cctaagttat ttaaatattt aagcacttga
1201 gtcctaaaga cccttaagaa acgaccagtc ggaggctgtg aggtcatcca
1251 gattcggaaa gctatgaaac atttgtgtat ccccaacgct tttctcaggt
1301 tgtgattgaa ctggatcctg atcgtgagta tatccatatt cgtcgtgaat
1351 ggacggttga cgtggctgat gatcttgaaa tagaggggat ttggaacttc
1401 ccagatatat gcgccattcc ctgcttgagc tgcagtgatg ggttcccctg
1451 tgcgtgaatc catggttgtg gcagttgatt gacagatact aataacaccc
1501 tcattcaaga tctattctct tcctcctgtt gcgtctcttc gcttccctgt
1551 gctgtacttt gattggaagc tgagtacagt ggtccttcga gagtgatgaa
1601 gattgcattt tttaaggccc aattctttaa tgctgtgttt ttttcctcgt
1651 tgaggaattc attataactg ctgttcggac caggattgca caggaagatt
1701 gtcggtatcc cgcctttaat ttgaactggc tttccgtatt ttgtgttgga
1751 ctgccagtct ctttgggccc ccatgaactc tttaaagtgt ttgaggaaat
1801 gcgggtcgac gtcatcaatg acgttgtacc aggcgtcgtt actgtatact
1851 ttgggactca ggtccagatg tccgcacaaa tagttatgtg gtcccaatga
1901 tctagcccac atcgtcttcc ccgttcgact atctccctca attactatac
1951 tccgaggtct aaggggccgc gcagcggcat cgacaacgtt atcgatggcc
2001 caaacttcaa gttcttctgg aacttgatcg aaagaagaag gagaaaaagg
2051 agaaatatag ggagccggtg gctcctgaaa gattctatct agatttgcat
2101 ttaaattatg aaattgtagt acaaaatctt taggagctag ttccttaatg
2151 actctaagag cctctgactt actgcctgcg ttaagtgctg cggcgtaagc
2201 gtcgttggct gtctgctgtc ctcctcttgc tgatcttcca tctatctgaa
2251 actctcccca ctcgagagtg tccccgtcct tgtcgatgta ggccttgaca
2301 tctgagcttg atttagctcc ctgaatgttc ggatggaaat gtgctgacct
2351 ggttggggat accaggtcga agaatctgtt attcgtgcag acgaatttgc
2401 cctcgaactg gatgagcaca tggagatgag ggctcccatc ttcgtgtaac
2451 tctctgcaga gtttgatgta ttttttattc gagggtgtgt tgatggcttg
2501 aatttgggaa agtgcttcct ctttagtgag tgagcactgt ggataagtga
2551 tgaaatagtt tttggcttgt actttaaaac gtttgggggg agccattgac
2601 tttggtcaat tagagacaac tgatgggctt ttactctggg aattggagac
2651 tggatacaat ttatagtgtc tccaaatggc atattctgta aataactaga
2701 agttcgtttg aaattcaaat tcccctttgg ggtccaaaag cggccatccg
2751 tataatatt