Sequence of DPV Croton yellow vein mosaic alphasatellite
Croton yellow vein mosaic alphasatellite, complete sequence, clone 9c-RCA-cI-p
ACC No: FN658711
Dated: 2012-02-23 | Length: 1347 | CRC: 317220407
ID FN658711; SV 1; circular; genomic DNA; STD; VRL; 1347 BP.
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AC FN658711;
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DT 08-FEB-2010 (Rel. 103, Created)
DT 23-FEB-2012 (Rel. 111, Last updated, Version 2)
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DE Croton yellow vein mosaic alphasatellite, complete sequence, clone
DE 9c-RCA-cI-p
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KW .
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OS Croton yellow vein mosaic alphasatellite
OC Viruses; Satellites; Satellite Nucleic Acids;
OC Single stranded DNA satellites; Begomovirus-associated alphasatellites.
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RN [1]
RP 1-1347
RA Thompson J.R.;
RT ;
RL Submitted (10-DEC-2009) to the INSDC.
RL Thompson J.R., International Centre for Genetic Engineering and
RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV),
RL ITALY.
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RN [2]
RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.;
RT "A survey of geminiviruses and associated satellite DNAs in the
RT cotton-growing areas of northwestern India";
RL Arch. Virol. 0:0-0(2011).
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FH Key Location/Qualifiers
FH
FT source 1. .1347
FT /organism="Croton yellow vein mosaic alphasatellite"
FT /host="Acalypha sp."
FT /mol_type="genomic DNA"
FT /country="India:Haryana"
FT /collection_date="Sep-2007"
FT /clone="9c-RCA-cI-p"
FT /db_xref="taxon:713089"
FT CDS 71. .1012
FT /gene="alpha rep"
FT /product="replication protein"
FT /db_xref="GOA:D3HTY0"
FT /db_xref="InterPro:IPR000605"
FT /db_xref="InterPro:IPR003365"
FT /db_xref="UniProtKB/TrEMBL:D3HTY0"
FT /protein_id="CBJ19304.1"
FT /translation="MSHSRNWCFTIFNYVLPLFTTLPEWANYLVFQEEECPTTKKRHIQ
FT GYVNLKRNQRFAFLKKKLPDGSHIEPCRGSASSNRDYCTKDASRTGGPWEFGVFCETGS
FT NKRKTMERFQEDPEELRLADPKLYRRCLATKVNTEFSGLVLPVPDRPWQLVAQKALDQG
FT PDDRTIIWVYGSEGNEGKTTWAKIKIQEGWFYSRGGKGENIKYQYAEHLGHCVFDIPRQ
FT VEDNLQYTVLEEIKDRLIRSSKYEPIDFNCSDKVHLVVLSNFLPCLDVEYNNRGELVKK
FT PLLSRDRVFIINIDESVCGHPDDLKNFDVYLE"
XX
SQ Sequence 1347 BP; 474 A; 247 C; 292 G; 334 T; 0 other;
fn658711 Length: 1347 23-FEB-2012 Type: N Check: 6715 ..
1 accccgcctc ggcacaaaac cttggcacat tgactttagt caataactct
51 cttctctctc tcaatataaa atgtcccatt cgaggaactg gtgctttacc
101 attttcaatt atgtccttcc cctctttaca actttgcctg aatgggcaaa
151 ttatttagtc ttccaggagg aagaatgtcc cactactaag aaacgccata
201 tccagggata tgtgaatttg aaacgcaatc aacgatttgc gtttctaaag
251 aagaaattgc cagatggatc ccatattgaa ccttgcagag gatccgcatc
301 cagcaataga gactattgca caaaggatgc ttctcggacc ggagggccat
351 gggagtttgg tgtgttctgc gaaacaggga gcaacaagag gaaaacgatg
401 gaacgttttc aggaagaccc agaagaactc agacttgccg accctaaact
451 gtatcgtcgc tgcctggcga cgaaggttaa tacggagttc agtggtttgg
501 tactccctgt acctgaccga ccttggcaac tggtggctca gaaggcactc
551 gaccaaggcc cagatgatag aactatcata tgggtgtatg gctctgaagg
601 caatgaaggg aaaacaacgt gggccaagat caagattcag gaaggatggt
651 tctactcaag gggaggtaaa ggagaaaaca taaaatacca gtatgcagag
701 catctgggtc attgtgtttt cgatatcccc agacaggtag aagacaatct
751 acagtacacc gtattagaag agattaagga tagattaatt aggtcttcta
801 aatacgaacc aatagatttt aattgtagtg ataaggttca tctagttgta
851 ttatcgaatt ttttgccttg tttagatgta gaatataata ataggggtga
901 attagttaaa aaacccttat tatctaggga tagggttttt attattaata
951 ttgatgagtc tgtatgtggt catcctgatg acctcaagaa ttttgatgtg
1001 tatcttgaat aaattcaatt tattcatgag aaaaaaaaaa gaaaaaaaaa
1051 agactagact aaaaaacaat acctataaac aaaacaaagg ccccgcaggg
1101 gaatgaaaca aacacgtgag aaaaaaaaag aaaaaaaaaa agaaaataac
1151 cggatttgaa ataaaatttc aattccgtta ataaaaaaaa gagaaagaaa
1201 agaagtggtc cccacccact cgaatgacgc ggatcactaa ccggtagttc
1251 cggtaacaaa cacaaaaacc ggaactgttt aaaaaaagaa aagggaaagg
1301 tgactgtcta ccgtgccaag gtacctataa gaggcggggt tagtatt