Sequence of DPV Cotton leaf curl Multan alphasatellite
Okra virus alphasatellite [India:Haryana:2007], complete sequence, clone 10b-RCA-aI-F
ACC No: FN658718
Dated: 2012-02-23 | Length: 1377 | CRC: -676229503
ID FN658718; SV 1; circular; genomic DNA; STD; VRL; 1377 BP.
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AC FN658718;
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DT 08-FEB-2010 (Rel. 103, Created)
DT 23-FEB-2012 (Rel. 111, Last updated, Version 2)
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DE Okra virus alphasatellite [India:Haryana:2007], complete sequence, clone
DE 10b-RCA-aI-F
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KW .
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OS Okra virus alphasatellite [India:Haryana:2007]
OC Viruses; Satellites; Satellite Nucleic Acids;
OC Single stranded DNA satellites; Begomovirus-associated alphasatellites.
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RN [1]
RP 1-1377
RA Thompson J.R.;
RT ;
RL Submitted (10-DEC-2009) to the INSDC.
RL Thompson J.R., International Centre for Genetic Engineering and
RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV),
RL ITALY.
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RN [2]
RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.;
RT "A survey of geminiviruses and associated satellite DNAs in the
RT cotton-growing areas of northwestern India";
RL Arch. Virol. 0:0-0(2011).
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FH Key Location/Qualifiers
FH
FT source 1. .1377
FT /organism="Okra virus alphasatellite [India:Haryana:2007]"
FT /host="Abelmoschus esculentus"
FT /mol_type="genomic DNA"
FT /country="India:Haryana"
FT /collection_date="Sep-2007"
FT /clone="10b-RCA-aI-F"
FT /db_xref="taxon:713914"
FT CDS 79. .1026
FT /gene="alpha rep"
FT /product="replication protein"
FT /db_xref="GOA:D3HTY3"
FT /db_xref="InterPro:IPR000605"
FT /db_xref="InterPro:IPR003365"
FT /db_xref="UniProtKB/TrEMBL:D3HTY3"
FT /protein_id="CBJ19307.1"
FT /translation="MPTIQSQWWCFTVFFLSATAPDLVPLFENTHVSYACWQEEESPTT
FT RRRHLQGYLQLKGKRSLAQVKALFGDLNPHLEKQRARKTDEARDYCMKEETRVSGPFEF
FT GEYTAAGSHKRRQRESVIRSPVRMAEENPSVFRRVKAKIAEEDFQKTANEIQISNLKSW
FT QSRLKTLLERDPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVSYQYIG
FT CLGNNIVFDIPRDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLINCIHVVVMSNFLPDF
FT EKISIDRVHVIPCRPCGVCLKHHHINDNCDDYVD"
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SQ Sequence 1377 BP; 418 A; 264 C; 310 G; 385 T; 0 other;
fn658718 Length: 1377 23-FEB-2012 Type: N Check: 6947 ..
1 acccagcctc ggttccctct cctcggttcc cttgtgcgat tcacgtgctc
51 tctctcttct gtgcccttaa aagaaaaaat gcctacgatt cagtcccaat
101 ggtggtgttt caccgtcttc ttcctttctg cgactgcccc cgaccttgtg
151 cctctcttcg agaacactca cgtgagttac gcctgctggc aagaggaaga
201 gtctcccacg actcgacgtc gccacctgca ggggtatctc caattgaagg
251 ggaaaagaag ccttgcgcag gttaaggcac tctttggtga cctgaaccct
301 cacctggaga aacagcgtgc gcgtaagacc gacgaagctc gggattattg
351 tatgaaagag gaaactaggg tttccggccc ctttgaattt ggtgaatata
401 ctgctgcagg ttcgcacaaa cgccggcaac gagaatctgt aattcgaagt
451 cctgttagaa tggctgagga gaatccgtca gtcttccgac gagtcaaggc
501 aaagattgca gaagaagatt tccagaagac cgcgaatgag attcaaattt
551 caaatttgaa atcttggcaa tcgcgcctga agacgctcct cgagagggac
601 ccagatgacc gcactatttt ctgggtttat gggccagatg gtggtgaagg
651 aaaatccaca ttcgcgcgag acctgtacag aagtgggtcc tggttctata
701 ctcgtggtgg gtctgccgat aatgtcagct accagtatat agggtgttta
751 ggaaataata ttgtatttga tattcctcgt gataagaagg attatctaca
801 atacagttta atagaaatgt ttaaggatag attaatagtt agtaataagt
851 atgagcctct catggctcct ttaattaatt gtattcatgt agttgtaatg
901 tctaattttc tcccagactt tgagaaaatt agcattgata gagttcatgt
951 aattccatgt agaccatgtg gtgtttgtct taaacaccac catattaatg
1001 ataattgcga tgattatgtt gattaaatag ttttgtttct tgaatacaag
1051 aaaaaatgaa attaaaaaaa ataaacgaac gatcccatta taattcattt
1101 ggaaaacaat tgccgcgcag cggcattcaa aaaaaatttt gtttctttaa
1151 aaaaagaaag aatgaaatga aaaaaaaaag aatataaaaa ataaaaaaat
1201 cagggattat aatgtgggcc atactaagag ctctatgtga gagagaaaat
1251 gtaattgggt actgttcata cacggaggga ctaaatttgt aaatattatg
1301 tagtctaggg gtatgcgctt gcaatttgcc gggatcctag gatataaata
1351 acacgtcacc gaggctggtg tagtatt