Sequence of DPV Gossypium darwinii symptomless alphasatellite
Cotton leaf curl Burewala alphasatellite, complete sequence, clone 9S1-RCA-aIII-F
ACC No: FN658730
Dated: 2012-02-23 | Length: 1378 | CRC: 137566920
ID FN658730; SV 1; circular; genomic DNA; STD; VRL; 1378 BP.
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AC FN658730;
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DT 08-FEB-2010 (Rel. 103, Created)
DT 23-FEB-2012 (Rel. 111, Last updated, Version 2)
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DE Cotton leaf curl Burewala alphasatellite, complete sequence, clone
DE 9S1-RCA-aIII-F
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KW .
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OS Cotton leaf curl Burewala alphasatellite
OC Viruses; Satellites; Satellite Nucleic Acids;
OC Single stranded DNA satellites; Begomovirus-associated alphasatellites.
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RN [1]
RP 1-1378
RA Thompson J.R.;
RT ;
RL Submitted (10-DEC-2009) to the INSDC.
RL Thompson J.R., International Centre for Genetic Engineering and
RL Biotechnology (ICGEB), Via Piovega 23, Ca'Tron di Roncade, 31056 (TV),
RL ITALY.
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RN [2]
RA Zaffalon V., Mukherjee S.K., Reddy V.S., Thompson J.R., Tepfer M.;
RT "A survey of geminiviruses and associated satellite DNAs in the
RT cotton-growing areas of northwestern India";
RL Arch. Virol. 0:0-0(2011).
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FH Key Location/Qualifiers
FH
FT source 1. .1378
FT /organism="Cotton leaf curl Burewala alphasatellite"
FT /host="Gossypium hirsutum"
FT /mol_type="genomic DNA"
FT /country="India:Rajasthan"
FT /collection_date="Sep-2007"
FT /clone="9S1-RCA-aIII-F"
FT /db_xref="taxon:713091"
FT CDS 70. .1017
FT /gene="alpha rep"
FT /product="replication protein"
FT /db_xref="GOA:D3HTY8"
FT /db_xref="InterPro:IPR000605"
FT /db_xref="InterPro:IPR003365"
FT /db_xref="UniProtKB/TrEMBL:D3HTY8"
FT /protein_id="CBJ19312.1"
FT /translation="MPSAQSVFWCFTIFFTSASPPDLVPLFENTSVSYACWQEEESPTT
FT RRRHLQGYLQLKTKKSLSAVKSLFGDLNPHLEKQRARRTDEARDYCMKEETRVSGPFEF
FT GEYCPSGSHKRRQRESVIRSPVRMAEENPSVFRRVKAKIAEEEFQKTAHEIQISNLKSW
FT QLRLKTLLERAPDDRTIFWVYGPDGGEGKSTFARDLYRSGTWFYTRGGSADNVSYQYIG
FT QLGNNIVFDIPRDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLVNCIHVVVMSNFLPDF
FT EKISQDRVHVIPCRPCGVCLKHHNINDNCEDYID"
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SQ Sequence 1378 BP; 416 A; 261 C; 309 G; 392 T; 0 other;
fn658730 Length: 1378 23-FEB-2012 Type: N Check: 3003 ..
1 acccagcctt gtctacctct ccttggctac ctcgtgcgaa tcacgtgagt
51 tttcgctctc tcgcttaaga tgccttctgc tcagtctgtc ttttggtgct
101 tcaccatttt cttcacgagt gcttctcccc ctgacctggt gcctctcttc
151 gaaaacacca gtgtgtctta tgcctgctgg caggaagaag agtcgcccac
201 gactcgacga cgccacctgc agggatatct gcagttgaag actaaaaaat
251 ctctctctgc ggtaaagtct ttgtttgggg atctcaatcc ccatcttgag
301 aaacaacgag ctcgtcggac ggacgaagct cgtgactatt gtatgaaaga
351 ggaaactagg gtttccggtc ccttcgaatt tggggaatat tgccctagtg
401 ggtctcacaa acgccggcaa agggaatcgg taattcgatc tccggtgaga
451 atggccgagg aaaatccgtc cgtcttccgg cgagtaaagg caaagattgc
501 agaggaagaa ttccagaaga ccgcgcatga gattcaaatt tcaaatttga
551 aatcttggca attgcgccta aagacgctcc tggaacgtgc cccagatgac
601 cgcactatct tctgggtata tgggccagat ggtggtgaag ggaaatcaac
651 ctttgctcga gacctgtata gaagtgggac ctggttctat acacgtggtg
701 ggtctgctga taatgttagt tatcagtaca taggtcaact aggaaataat
751 attgtatttg atatccctcg tgataagaag gattatctac agtacagttt
801 aatagagatg tttaaggata gattaatagt tagtaataag tacgagcctc
851 ttatggcccc tttggttaat tgtattcatg ttgtagttat gtctaatttt
901 ctcccagact ttgagaagat tagtcaggat agagtccatg taatcccttg
951 tagaccatgt ggtgtttgtc ttaaacacca taatattaat gataattgcg
1001 aggattatat tgactaaata attttgtttc ttgaaaacaa gaaagaatgt
1051 aatgaaaaat gaaaaaataa aaaacatgag ccttctacta ttttatttac
1101 ggaataagtg ccgcgcagcg gcattaaaaa aaataaaaat aaaaaagaag
1151 tataaaaata tatttattat gtttttctaa aacgacgacg tattggaaaa
1201 gtgtaaatgg gaccaaaatg taaatatatg aaacttcgtg cttgcggagc
1251 aaaaacttag aaatataagg ttagcggagt aaatatatga aagttgaatg
1301 gcaccgctgt aattactgag cttggctacc aggtatccaa ggatataaat
1351 aacacgtcga caaggctggt gtagtatt