Sequence of DPV Cotton leaf curl Gezira alphasatellite
Okra yellow crinkle Cameroon alphasatellite [CM:Njo5sp3:09] complete sequence, isolate Njo5sp3
ACC No: FN675288
Dated: 2011-01-10 | Length: 1353 | CRC: -2126310736
ID FN675288; SV 1; linear; genomic DNA; STD; VRL; 1353 BP.
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AC FN675288;
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DT 10-JAN-2011 (Rel. 107, Created)
DT 10-JAN-2011 (Rel. 107, Last updated, Version 1)
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DE Okra yellow crinkle Cameroon alphasatellite [CM:Njo5sp3:09] complete
DE sequence, isolate Njo5sp3
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KW .
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OS Okra yellow crinkle Cameroon alphasatellite [CM:Njo5sp3:09]
OC Viruses; Satellites; Satellite Nucleic Acids;
OC Single stranded DNA satellites; Begomovirus-associated alphasatellites.
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RN [1]
RP 1-1353
RA Nkeabeng Leke W.W.;
RT ;
RL Submitted (26-FEB-2010) to the EMBL/GenBank/DDBJ databases.
RL Nkeabeng Leke W.W., Department of Plant Bilogy and Forest Genetics, SLU,
RL Box 7080, SE-750 07, SWEDEN.
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RN [2]
RA Leke W.N., Kvarnheden A., Brown J.K.;
RT "Diversity and novel DNA satellites associated with monopartite
RT begomoviruses in the equatorial rain forest region of Cameroon";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .1353
FT /organism="Okra yellow crinkle Cameroon alphasatellite
FT [CM:Njo5sp3:09]"
FT /isolate="Njo5sp3"
FT /mol_type="genomic DNA"
FT /country="Cameroon:Njombe"
FT /isolation_source="Abelmoschus esculentus"
FT /collected_by="W.N.Leke"
FT /collection_date="2008"
FT /identified_by="W.N.Leke"
FT /db_xref="taxon:743030"
FT CDS 81. .950
FT /gene="rep"
FT /product="replication association protein"
FT /protein_id="CBK25785.1"
FT /translation="MPSIKSVCWCFTLNFTGEIPQLDFSNKGVQYAVWQHEKVNHDHLQ
FT GFFQFKGRRSLLQAKKVFDGYHPHLEVMRAPSAEQAKKYCEKPESRVSGPWVFGEFVPS
FT GSNKRKLEELLENSDNEAEDPQRYRRAMAKKMNKDSHQWALDNAFPFELKEWQERLSEL
FT ISSPADDRTIIWVYGPTGGEGKSQFARYLGLNKSWIYLPGGKSNDMMYMYCKSPKCNLV
FT IDYPRCNKEYINYSFLEMIKNRTIYSYKYEPVGFIDPTCNVHVIVMANFLPDYERISED
FT RIKLIDLS"
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SQ Sequence 1353 BP; 395 A; 244 C; 281 G; 433 T; 0 other;
fn675288 Length: 1353 10-JAN-2011 Type: N Check: 2841 ..
1 acccggcctc agtcctctgt cccctgtacg gaaattgata aaatttcctc
51 ctggtaccct tcagctctct ctcttctgtc atgccttcta ttaagagtgt
101 ctgttggtgt tttactctta atttcactgg ggaaattcct cagttggatt
151 tttcgaataa gggtgtccag tatgctgtct ggcaacatga gaaggtgaat
201 catgatcacc ttcaagggtt tttccagttc aagggacgac gttcgttgtt
251 gcaggccaaa aaagtatttg atggttacca tccccatctt gaagtgatgc
301 gagctccgtc tgcagaacag gcgaagaaat attgtgagaa acctgaatct
351 agggtttctg gtccatgggt atttggtgaa tttgtcccgt ccggttctaa
401 caagcgaaaa ttggaagaat tgcttgagaa ttcggacaat gaagctgaag
451 acccccagag atatcgtcgt gcaatggcga agaagatgaa taaagattca
501 catcaatggg ctttggataa tgcttttcca tttgaattaa aggaatggca
551 ggagcgtctg tctgaattga tatcctcgcc tgcagatgat cgtactatca
601 tctgggtata tggacccact ggtggtgaag gaaaatcgca atttgcgcgc
651 tatctgggtt tgaataaaag ttggatttat ctacctgggg ggaaatccaa
701 tgacatgatg tatatgtatt gtaaatcccc taagtgtaat ttagtcatag
751 attatcctag gtgtaataaa gagtatatta attatagttt tctagaaatg
801 attaagaata gaactatcta ttcttataag tatgaacctg ttggatttat
851 tgatccaaca tgtaatgtac atgtaattgt aatggctaat ttcctccctg
901 attatgagag gattagtgaa gatagaataa aattaattga tttgtcttaa
951 tttcccttct gttttatgtg ttcgttctaa ttaattacca cacaaacata
1001 aactaagaaa accatcgccg cgcagcggcc aagagataaa aatatttttg
1051 cttcgtgaaa acaagaagga atgaaatgaa ataataattt aaaattaatc
1101 atttcttgta ttatctaaac atataaatag tatttgatct tttatgtttt
1151 gggcccaacc tatccgggtt tcccaaatgg atcattttac ccgaatagga
1201 tccgcgtgtt gtaacagtgt ttcattaagg gtatttctgt ccaaataatt
1251 tgagctatgt cccctgcgca tgttagcaat aaagctcagt cccctgcgca
1301 cgataacctg tgtcccctat ataaggaatt acactgaggc cggtatcagt
1351 att