Sequence of DPV Papaya ringspot virus

Papaya ringspot virus P partial gene for polyprotein, isolate VNP-DienBien1, genomic RNA

ACC No: FN808397

Dated: 2010-04-21 | Length: 1059 | CRC: 1769126464

                
ID   FN808397; SV 1; linear; genomic RNA; STD; VRL; 1059 BP.
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AC   FN808397;
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DT   21-APR-2010 (Rel. 104, Created)
DT   21-APR-2010 (Rel. 104, Last updated, Version 1)
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DE   Papaya ringspot virus P partial gene for polyprotein, isolate
DE   VNP-DienBien1, genomic RNA
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KW   .
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OS   Papaya ringspot virus P
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1059
RA   Dang H.T.;
RT   ;
RL   Submitted (14-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL   Dang H.T., Plant biotechnology, Institute of biotechnology, 18 Hoang Quoc
RL   Viet road, Ha noi, 844, VIET NAM.
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RN   [2]
RA   Chu H.H., Nguyen H.M., Bui L.C., Dang H.T., Le B.T.;
RT   "Sequence varieties in the coat protein gene of Papaya ringspot virus
RT   isolation from multiple location in Vietnam";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1059
FT                   /organism="Papaya ringspot virus P"
FT                   /isolate="VNP-DienBien1"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12206"
FT   CDS             <1. .>1059
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CBL59301.1"
FT                   /translation="LEQAPFNELAKQGRAPYVSEVGLRRLYTSKRGSMDELEAYIDKYF
FT                   ERVRGDSPELLVYHESRNTDDYQLVCGSNTHVFHQSKNEAVDAGLNEKLKEKEKQKEEK
FT                   QKDKNNEGASDGNSVSTSTKTGERDRDVNAGTSGTFTVPRIKSFTDKMILPRIKGKTVL
FT                   NLNHPLQYNPQQIDISNTRATQTQFEKWYEGVRNDYGLNDNEMQVMLNGLMVWCIENGT
FT                   SPDMSGVWVMMEGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYMPR
FT                   YGIKRNLTDISLARCAFDFYEVNSKTPDRAREAHMQMKAAALRNASRRMFGMDGSVSNK
FT                   EENTERHTVEDVN"
FT   mat_peptide     <1. .264
FT                   /product="NIb"
FT   mat_peptide     265. .>1059
FT                   /product="CP"
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SQ   Sequence 1059 BP; 364 A; 184 C; 258 G; 253 T; 0 other;

fn808397 Length: 1059  21-APR-2010  Type: N  Check: 4628  ..

       1  cttgagcaag ctccattcaa tgagttagca aagcagggca gagctccata
      51  tgtgtctgag gttggattaa ggcgcttata caccagtaag cgtggatcca
     101  tggatgaatt agaagcttac atagataaat attttgagcg agtgagggga
     151  gattcacccg aattgctggt gtatcatgaa tcaaggaaca ctgatgatta
     201  tcagcttgtt tgcggtagta acacacatgt gtttcaccag tccaaaaatg
     251  aggccgtgga tgctggtttg aatgagaagc tcaaagagaa agaaaaacaa
     301  aaagaagaaa aacaaaaaga taagaacaat gaaggtgcta gtgacggaaa
     351  cagtgtgtca actagtacaa aaactggaga gagagataga gatgtcaatg
     401  ccggaactag tggaactttc actgttccga gaataaaatc atttactgac
     451  aagatgattt taccaagaat taagggaaaa actgtcctta atttaaatca
     501  ccctcttcag tataatccgc aacaaattga tatctcaaac actcgtgcca
     551  cacaaactca attcgagaaa tggtatgagg gagtgaggaa tgattacggt
     601  cttaacgata atgaaatgca agtgatgtta aatggtttga tggtttggtg
     651  tatcgaaaat ggtacatccc cagacatgtc tggtgtttgg gtaatgatgg
     701  aaggggaaac ccaagtcgat tatcctatca agcctttaat cgaacatgca
     751  actccctcgt ttaggcaaat catggctcac ttcagtaacg cggcagaggc
     801  atacattgcg aagaggaatg caactgaaag gtacatgccg cggtatggaa
     851  tcaagagaaa tttgactgac attagtctcg ccagatgtgc tttcgatttc
     901  tatgaggtga attcaaaaac acctgataga gctcgtgaag ctcatatgca
     951  gatgaaagct gcagcactgc gcaatgctag tcgcagaatg tttggaatgg
    1001  acggcagtgt cagtaacaag gaagaaaaca cggagagaca cacagtggaa
    1051  gatgtcaac