Sequence of DPV Papaya ringspot virus

Papaya ringspot virus P partial gene for polyprotein, isolate LyNhan1, genomic RNA

ACC No: FN808403

Dated: 2010-04-21 | Length: 1074 | CRC: -1243967225

                
ID   FN808403; SV 1; linear; genomic RNA; STD; VRL; 1074 BP.
XX
AC   FN808403;
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DT   21-APR-2010 (Rel. 104, Created)
DT   21-APR-2010 (Rel. 104, Last updated, Version 1)
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DE   Papaya ringspot virus P partial gene for polyprotein, isolate LyNhan1,
DE   genomic RNA
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KW   .
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OS   Papaya ringspot virus P
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1074
RA   Dang H.T.;
RT   ;
RL   Submitted (14-APR-2010) to the EMBL/GenBank/DDBJ databases.
RL   Dang H.T., Plant biotechnology, Institute of biotechnology, 18 Hoang Quoc
RL   Viet road, Ha noi, 844, VIET NAM.
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RN   [2]
RA   Chu H.H., Nguyen H.M., Bui L.C., Dang H.T., Le B.T.;
RT   "Sequence varieties in the coat protein gene of Papaya ringspot virus
RT   isolation from multiple location in Vietnam";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1074
FT                   /organism="Papaya ringspot virus P"
FT                   /isolate="LyNhan1"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12206"
FT   CDS             <1. .>1074
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CBL59307.1"
FT                   /translation="LEQAPFNELAKQGRAPYVSEVGLRRLYTSKRGSMDELEAYINKYF
FT                   ERERGDSPELLVYHESRSTDEYQFVCGGHAHVFHQSKNEAVDAGINEKLKEKEKQKEKE
FT                   KEKDKQKDKDNDGASDGNDVSTSTKTGERDRDVNAGTSGTFTVPRIKSFTDKMILPRIK
FT                   GKSVLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRNDYGLSDNEMQVMLNGLMVWC
FT                   IENGTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATE
FT                   RYMPRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTSRRMFGMDG
FT                   SVSNKGENTERHTVEDVN"
FT   mat_peptide     <1. .264
FT                   /product="NIb"
FT   mat_peptide     265. .>1074
FT                   /product="CP"
XX
SQ   Sequence 1074 BP; 375 A; 177 C; 259 G; 263 T; 0 other;

fn808403 Length: 1074  21-APR-2010  Type: N  Check: 2761  ..

       1  cttgagcaag ctccattcaa tgaattagca aagcagggca gagctccata
      51  tgtgtctgag gttggattaa ggcgcctata caccagtaag cgtggttcga
     101  tggatgagtt agaagcctac ataaataaat attttgagcg agaaagggga
     151  gattcgcctg agttactggt gtatcatgaa tcaagaagca cagacgaata
     201  tcagtttgtc tgcggcggtc atgcacatgt atttcaccag tccaaaaatg
     251  aagctgtgga tgctggtata aatgaaaagc taaaagaaaa ggaaaaacaa
     301  aaagaaaaag aaaaagaaaa agacaaacaa aaagataaag ataatgatgg
     351  agctagtgac ggaaatgatg tgtcaactag cacaaaaact ggagagagag
     401  atagagatgt caacgccgga actagtggaa ctttcactgt tccaaggata
     451  aagtctttta ctgataagat gattttgcca agaattaagg gaaagtctgt
     501  ccttaattta aatcatcttc ttcagtataa tccgcaacaa attgacattt
     551  caaacactcg tgccactcaa tctcaatttg aaaagtggta tgagggagtg
     601  aggaatgatt atggtcttag tgataacgaa atgcaagtaa tgttaaatgg
     651  tttgatggtt tggtgtatcg aaaatggtac atctccagac atatctggtg
     701  tttgggtaat gatggatggg gaaacccagg ttgattatcc catcaaacct
     751  ttaattgaac atgcaactcc ttcattcagg caaatcatgg ctcacttcag
     801  taacgcggca gaagcatata tcgcgaagag aaatgcaact gagaggtaca
     851  tgccgcggta tggaattaaa agaaatttga ctgacattag tctcgctcga
     901  tatgctttcg atttctatga ggtgaattcg aaaacacctg atagggctcg
     951  tgaagctcat atgcagatga aggctgcagc gctacgtaac actagtcgca
    1001  gaatgtttgg aatggacggc agtgtcagta acaagggaga aaacacggag
    1051  agacacacag tggaagatgt caac