Sequence of DPV Papaya ringspot virus

Papaya ringspot virus partial gene for polyprotein, isolate Laichau, genomic RNA

ACC No: FN822235

Dated: 2010-05-09 | Length: 1068 | CRC: 565604125

                
ID   FN822235; SV 1; linear; genomic RNA; STD; VRL; 1068 BP.
XX
AC   FN822235;
XX
DT   09-MAY-2010 (Rel. 104, Created)
DT   09-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Papaya ringspot virus partial gene for polyprotein, isolate Laichau,
DE   genomic RNA
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1068
RA   Chu H.H.;
RT   ;
RL   Submitted (03-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Chu H.H., Institute of Biotechnology (IBT), VAST, Plant Cell Technology,
RL   Hoang Quoc Viet Str. 18, Cau Giay, Hanoi, 10000, VIET NAM.
XX
RN   [2]
RA   Chu H.H., Nguyen H.M., Nguyen N.T., Le B.T.;
RT   "Sequence varieties in the coat protein gene of Papaya ringspot virus
RT   isolation from multiple location in Viet Nam";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1068
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="Laichau"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Lai Chau"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .>1068
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CBL88688.1"
FT                   /translation="LEQAPFNELANQGRAPYVSEVGLKRLYTSERGSMDELKAYINKYF
FT                   ERERGDSPELLVYHESHNTDNHQLVCSNNTHVFHQSKNEAVDAGLNEKLKEKEKQKEKE
FT                   KDKQKDKDNDGASDGNDVSTSTKTGERDRDVNAGTSGTFTVPRIKSFTDKMILPRIKGK
FT                   TVLNLSHLLQYNPQQIDISNTRATQSQFEKWYEGVKDDYGLNDNEMQVMLNGLMVWCIE
FT                   NGTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERY
FT                   MPRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTNRRVFGMDGSV
FT                   SNKEENTERHTVEDVN"
FT   mat_peptide     <1. .264
FT                   /product="Nib protein"
FT   mat_peptide     265. .>1068
FT                   /product="coat protein"
XX
SQ   Sequence 1068 BP; 371 A; 189 C; 255 G; 253 T; 0 other;

fn822235 Length: 1068  09-MAY-2010  Type: N  Check: 7046  ..

       1  cttgagcaag ctccattcaa tgaattagca aatcagggca gggctccata
      51  tgtgtctgaa gttggattga agcgcttata cactagtgag cgtgggtcga
     101  tggatgaatt aaaagcttac ataaacaaat actttgagcg agagagggga
     151  gattcacctg aactactggt gtatcatgaa tcgcataaca ctgataatca
     201  tcagcttgtt tgcagtaata acacacatgt gtttcaccag tccaaaaatg
     251  aagctgtgga tgctggcctg aatgaaaagc tcaaagagaa agaaaaacag
     301  aaagaaaaag aaaaagataa acaaaaagat aaagataatg atggagctag
     351  tgacggaaac gatgtgtcaa ctagcacaaa aactggagag agagatagag
     401  atgtcaatgc cgggactagt ggaactttca ctgttccgag aataaaatca
     451  ttcaccgata agatgatctt gccaagaatt aaaggaaaaa ctgtccttaa
     501  tttgagtcat cttcttcagt ataatccgca acaaattgac atctcaaaca
     551  ctcgtgccac tcaatctcaa ttcgaaaagt ggtatgaggg agtgaaggat
     601  gattatggtc ttaatgataa tgaaatgcag gtgatgttaa atggtttgat
     651  ggtttggtgt atcgaaaacg gtacatctcc agacatatct ggtgtctggg
     701  taatgatgga tggggaaact caagtcgact atcccatcaa acctttgatt
     751  gaacatgcaa ctccttcatt taggcaaatc atggctcact tcagtaacgc
     801  ggcagaggca tacatcgcaa agaggaatgc aactgagagg tacatgccgc
     851  ggtatggaat caagaggaat ttgactgaca ttagcctcgc tagatacgct
     901  ttcgatttct atgaggtaaa ttcaaaaaca cctgataggg ctcgtgaagc
     951  tcacatgcag atgaaggctg cagcgctgcg taacactaat cgcagagtgt
    1001  ttggaatgga cggcagtgtc agtaacaagg aagaaaacac ggagagacac
    1051  acagtggaag atgtcaac