Sequence of DPV Papaya ringspot virus

Papaya ringspot virus partial gene for polyprotein, isolate Sonla 2, genomic RNA

ACC No: FN822237

Dated: 2010-05-09 | Length: 1074 | CRC: -1258328060

                
ID   FN822237; SV 1; linear; genomic RNA; STD; VRL; 1074 BP.
XX
AC   FN822237;
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DT   09-MAY-2010 (Rel. 104, Created)
DT   09-MAY-2010 (Rel. 104, Last updated, Version 1)
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DE   Papaya ringspot virus partial gene for polyprotein, isolate Sonla 2,
DE   genomic RNA
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KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1074
RA   Chu H.H.;
RT   ;
RL   Submitted (03-MAY-2010) to the EMBL/GenBank/DDBJ databases.
RL   Chu H.H., Institute of Biotechnology (IBT), VAST, Plant Cell Technology,
RL   Hoang Quoc Viet Str. 18, Cau Giay, Hanoi, 10000, VIET NAM.
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RN   [2]
RA   Chu H.H., Nguyen H.M., Nguyen N.T., Le B.T.;
RT   "Sequence varieties in the coat protein gene of Papaya ringspot virus
RT   isolation from multiple location in Viet Nam";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1074
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="Sonla 2"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Son La"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .>1068
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="CBL88690.1"
FT                   /translation="LEQAPFNELAKQGRAPYVSEVGLKRLYTSERGSMDELEAYIDKYF
FT                   ERERGDSPELLVYHESRSTDDYQLVCGNNTHVYHQSKNEAVDAGLNEKLKEKEKQKEKE
FT                   KEKEKQKDKDNDGASDGNDVSTSTKTGERDRDVNAGTSGTFTVPRIKSFTDKMILPRIK
FT                   GKTVLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRNDYGLNDNEMQVMLNGLMVWC
FT                   IENGTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATE
FT                   RYMPRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTSRRMFGMDG
FT                   SVSNKEENTERHTVED"
FT   mat_peptide     <1. .264
FT                   /product="Nib protein"
FT   mat_peptide     265. .>1074
FT                   /product="coat protein"
XX
SQ   Sequence 1074 BP; 379 A; 179 C; 259 G; 257 T; 0 other;

fn822237 Length: 1074  09-MAY-2010  Type: N  Check: 7875  ..

       1  cttgagcaag ctccattcaa tgaattagca aagcaaggta gggctccata
      51  tgtgtctgag gttggactga aacgattata cactagtgag cgtggatcaa
     101  tggatgaatt agaagcctac atagataaat attttgagcg agaaagggga
     151  gattcacctg agctgttggt gtatcacgaa tcgagaagta ctgacgatta
     201  tcagcttgtt tgcggcaata acacacatgt gtatcatcag tccaaaaatg
     251  aagctgtgga cgctggtctg aatgagaagc tcaaagagaa agaaaaacag
     301  aaagaaaaag aaaaagaaaa agaaaaacaa aaagataaag ataatgatgg
     351  agctagtgac ggaaacgatg tgtcaactag cacaaaaact ggagagaggg
     401  atagagatgt caatgctgga actagtggaa ctttcactgt tccaaggata
     451  aaatcattta ctgataagat gattttacca agaattaagg gaaaaactgt
     501  ccttaattta aatcatcttc tccagtataa tccgcaacaa attgacatct
     551  caaacactcg tgccactcaa tctcaatttg aaaagtggta tgaaggggtg
     601  aggaatgatt atggccttaa tgataacgaa atgcaagtga tgttaaatgg
     651  tttgatggtt tggtgtatcg agaatggtac atctccagac atatctggtg
     701  tctgggtaat gatggatggg gaaacccaag ttgattatcc cattaaacct
     751  ttgattgaac atgcaactcc ttcatttagg caaatcatgg ctcacttcag
     801  caacgcggca gaggcataca tcgcaaagag aaacgcaact gagaggtaca
     851  tgccgcggta tggaatcaag aggaatttga ctgacattag tctcgctaga
     901  tatgctttcg atttctatga ggtgaattca aaaacacctg atagggctcg
     951  tgaagctcat atgcagatga aggctgcagc gttacgcaac actagtcgca
    1001  gaatgtttgg aatggacggc agtgtcagta acaaggaaga aaacacggag
    1051  agacacacag tggaagatgt caac