Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus segment S NSs gene for NSs non-structural protein, isolate LYE40, genomic RNA
ACC No: FR692834
Dated: 2011-03-23 | Length: 1404 | CRC: -229392000
ID FR692834; SV 1; linear; genomic RNA; STD; VRL; 1404 BP.
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AC FR692834;
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DT 22-SEP-2010 (Rel. 106, Created)
DT 23-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE Tomato spotted wilt virus segment S NSs gene for NSs non-structural
DE protein, isolate LYE40, genomic RNA
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-1404
RA Moury B.;
RT ;
RL Submitted (21-SEP-2010) to the EMBL/GenBank/DDBJ databases.
RL Moury B., Institut National de Recherche Agronomiq, Station de Pathologie
RL Vegetale, Domaine St Maurice, BP94, F-84143 Montfavet Cedex, FRANCE.
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RN [2]
RA Tentchev D., Verdin E., Marchal C., Jacquet M., Aguilar J.M., Moury B.;
RT "Evolution and structure of Tomato spotted wilt virus populations: evidence
RT of extensive reassortment and insights into emergence processes";
RL J. Gen. Virol. 92(Pt 4):961-973(2011).
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FH Key Location/Qualifiers
FH
FT source 1. .1404
FT /organism="Tomato spotted wilt virus"
FT /segment="S"
FT /isolate="LYE40"
FT /mol_type="genomic RNA"
FT /country="France"
FT /isolation_source="Solanum lycopersicum"
FT /db_xref="taxon:11613"
FT CDS 1. .1404
FT /gene="NSs"
FT /product="NSs non-structural protein"
FT /function="inhibitor of plant defence"
FT /db_xref="InterPro:IPR004915"
FT /db_xref="UniProtKB/TrEMBL:E1Y5D9"
FT /protein_id="CBX23920.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ
FT LYSDSRSKSSFGYTAKVGNLPCEEGEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPSFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQVSIQKLFKVAGDETNKTFYLSI
FT ACIPNHNSVETALNISVICKHQLPVRKCKAPFKLSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKRKYFLSKT
FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQPVSVAKSLLKLDLSGIKKKESKI
FT PETYASGSK"
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SQ Sequence 1404 BP; 447 A; 280 C; 247 G; 430 T; 0 other;
fr692834 Length: 1404 23-MAR-2011 Type: N Check: 3178 ..
1 atgtcttcaa gtgtttatga gtcgatcatt cagacaagag cttcagtctg
51 gggatcaact gcatctggta aagctgttgt agattcttac tggatccatg
101 aacttggcac tggttctcca ctagttcaaa cccagctgta ttctgattca
151 agaagcaaaa gtagctttgg ctatactgca aaggtaggga atcttccctg
201 tgaagaagga gagattcttt ctcagcatgt gtatatccct atttttgatg
251 atattgattt tagcatcaat attgatgatt ctgttctggc actatctgtt
301 tgctcaaata cagtcaatac taacggagtg aaacatcaag gtcatttgaa
351 agttttgtct cctgctcagc tccactctat tggatctacc atgaacagat
401 ctgatattac agaccgattc cagcttcaag aaaaagacat aattcccaat
451 gacagataca ttgaagctgc aaacaaaggc tctttgtctt gtgtcaaaga
501 gcatacctat aagatcgaaa tgtgctataa tcaagctttg ggcaaagtga
551 atgttttatc ccctaacagg aatgtccatg aatggctgta cagtttcaag
601 ccaagtttca atcaagttga aagcaacaac agaactgtaa attctcttgc
651 agtgaaatct ctgctcatgt cagcagaaaa caacatcatg cctaactctc
701 aggcttttgt caaagcttcc actgattctc atttcaaact gagcctctgg
751 ctaagggttc caaaggttct gaagcaggtc tctattcaga aattgttcaa
801 agttgcagga gacgaaacaa ataaaacatt ttatttatct attgcttgca
851 ttccaaacca taacagtgtt gagacagctt taaacatttc tgttatttgc
901 aagcatcagc tcccagttcg taaatgtaaa gctcctttta aattatcaat
951 gatgttttct gatttaaagg agccttacaa cattgttcat gatccttcat
1001 atcctcagag gattgttcat gctctgcttg aaactcacac atcttttgca
1051 caagttcttt gcaacaactt acaagaagat gtgatcatct acactttgaa
1101 caactatgag ctaactcctg gaaagttaga tttaggtgaa agaaccttaa
1151 attacagtga agatatctgc aaaaggaaat atttcctttc aaaaacactt
1201 gaatgtcttc catctaacac acaaactatg tcttacttgg acagtatcca
1251 aatcccttcc tggaagatag actttgccag gggagaaatt aagatttctc
1301 cacaacctgt ttcagttgca aaatctttgt taaagcttga tttaagcgga
1351 atcaaaaaga aagaatctaa gattccggaa acatatgctt caggatcaaa
1401 ataa