Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus segment S NSs gene for NSs non-structural protein, isolate P61, genomic RNA
ACC No: FR693002
Dated: 2011-03-23 | Length: 1404 | CRC: -871170402
ID FR693002; SV 1; linear; genomic RNA; STD; VRL; 1404 BP.
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AC FR693002;
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DT 22-SEP-2010 (Rel. 106, Created)
DT 23-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE Tomato spotted wilt virus segment S NSs gene for NSs non-structural
DE protein, isolate P61, genomic RNA
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-1404
RA Moury B.;
RT ;
RL Submitted (21-SEP-2010) to the EMBL/GenBank/DDBJ databases.
RL Moury B., Institut National de Recherche Agronomiq, Station de Pathologie
RL Vegetale, Domaine St Maurice, BP94, F-84143 Montfavet Cedex, FRANCE.
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RN [2]
RA Tentchev D., Verdin E., Marchal C., Jacquet M., Aguilar J.M., Moury B.;
RT "Evolution and structure of Tomato spotted wilt virus populations: evidence
RT of extensive reassortment and insights into emergence processes";
RL J. Gen. Virol. 92(Pt 4):961-973(2011).
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FH Key Location/Qualifiers
FH
FT source 1. .1404
FT /organism="Tomato spotted wilt virus"
FT /segment="S"
FT /isolate="P61"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /isolation_source="Capsicum"
FT /collection_date="2007"
FT /db_xref="taxon:11613"
FT CDS 1. .1404
FT /gene="NSs"
FT /product="NSs non-structural protein"
FT /function="inhibitor of plant defence"
FT /db_xref="InterPro:IPR004915"
FT /db_xref="UniProtKB/TrEMBL:E1Y5V6"
FT /protein_id="CBX24088.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ
FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITGRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFRLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI
FT ACIPNYSSVETALNITVICKHQLPIRKFKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPGKLDLGEKTLNYSEDAYKRKYFLSKT
FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSISVAKSLLKLDLSGIKKKESKI
FT KEAHASGSK"
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SQ Sequence 1404 BP; 447 A; 273 C; 250 G; 434 T; 0 other;
fr693002 Length: 1404 23-MAR-2011 Type: N Check: 4752 ..
1 atgtcttcaa gtgtttatga gtcgatcatt cagacaagag cttcagtctg
51 gggatcaact gcatctggta aagctgttgt agattcttac tggattcatg
101 aacttggtac tggttctcaa ctagttcaga cccaactgta ttctgattca
151 agaagcaaaa gtagctttgg ctatactgca aaagtagggg atcttccttg
201 tgaagaagaa gagattcttt ctcagcatgt gtatatccct atttttgatg
251 atattgattt tagcatcaat attgatgact ctgttctggc attatctgtt
301 tgttcaaata cagtcaatgc taatggagtg aaacatcaag gtcatttgaa
351 ggttttgtct cctgctcagc tccactctat tggatctatc atgaacagat
401 ctgatattac gggtcgattc cagctccaag aaaaagatat aattcccaat
451 gacagataca ttgaagctgc aaacaaaggc tctttgtctt gtgtcaaaga
501 gcatacctat aagatcgaga tgtgctataa tcaagcttta ggcaaagtga
551 atgttctatc tcctaataga aatgtccatg aatggctgta cagtttcaag
601 ccaaatttca atcaagttga aagcaacaac agaactgtga attctcttgc
651 agtgaaatct ctgctcatgt cagcagaaaa caacatcatg cctaactctc
701 aagcttttgt caaagcttcc actgattctc atttcaggct gagcctctgg
751 ctaagggttc caaaggtttt gaagcagatt tccatccaga aattgttcaa
801 ggttgcagga gatgaaacaa ataaaacatt ttatttatct attgcctgca
851 ttccaaacta tagcagtgtt gagacagctt taaacattac tgttatttgc
901 aaacatcagc tcccaattcg taaattcaaa gctccttttg aattatcaat
951 gatgttttct gatttaaagg agccttacaa cattgttcat gatccttcat
1001 atccccaaag gattgttcat gctctgcttg aaactcacac atcttttgca
1051 caagttcttt gcaacaactt gcaagaagat gtgatcatct acaccttgaa
1101 caaccatgag ctaactcctg gaaagttaga tttaggtgaa aaaaccttga
1151 attacagtga agatgcctac aaaaggaaat atttcctttc aaaaacactt
1201 gaatgtcttc catctaacac acaaactatg tcttatttag acagcatcca
1251 aatcccttcc tggaagatag actttgccag gggagaaatt aaaatttctc
1301 cgcaatctat ttcagttgca aaatctttgt taaagcttga tttaagcggg
1351 atcaaaaaga aagaatctaa gattaaggaa gcacatgctt caggatcaaa
1401 atga