Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus segment S NSs gene for NSs non-structural protein, isolate P6-1, genomic RNA
ACC No: FR693003
Dated: 2011-03-23 | Length: 1404 | CRC: 1431115164
ID FR693003; SV 1; linear; genomic RNA; STD; VRL; 1404 BP.
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AC FR693003;
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DT 22-SEP-2010 (Rel. 106, Created)
DT 23-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE Tomato spotted wilt virus segment S NSs gene for NSs non-structural
DE protein, isolate P6-1, genomic RNA
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-1404
RA Moury B.;
RT ;
RL Submitted (21-SEP-2010) to the EMBL/GenBank/DDBJ databases.
RL Moury B., Institut National de Recherche Agronomiq, Station de Pathologie
RL Vegetale, Domaine St Maurice, BP94, F-84143 Montfavet Cedex, FRANCE.
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RN [2]
RA Tentchev D., Verdin E., Marchal C., Jacquet M., Aguilar J.M., Moury B.;
RT "Evolution and structure of Tomato spotted wilt virus populations: evidence
RT of extensive reassortment and insights into emergence processes";
RL J. Gen. Virol. 92(Pt 4):961-973(2011).
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FH Key Location/Qualifiers
FH
FT source 1. .1404
FT /organism="Tomato spotted wilt virus"
FT /segment="S"
FT /isolate="P6-1"
FT /mol_type="genomic RNA"
FT /country="Spain"
FT /isolation_source="Capsicum"
FT /collection_date="2007"
FT /db_xref="taxon:11613"
FT CDS 1. .1404
FT /gene="NSs"
FT /product="NSs non-structural protein"
FT /function="inhibitor of plant defence"
FT /db_xref="InterPro:IPR004915"
FT /db_xref="UniProtKB/TrEMBL:E1Y5T9"
FT /protein_id="CBX24089.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ
FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISSQKLFKVAGDETNKTFYLSI
FT VCIPNHNSVETALNITVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTSGKLDLGERTLNYSEDAYKRKYFLSKT
FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSIPVAKSLLKLDLSGIKKKESKI
FT KEAYASGSK"
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SQ Sequence 1404 BP; 445 A; 276 C; 253 G; 430 T; 0 other;
fr693003 Length: 1404 23-MAR-2011 Type: N Check: 6067 ..
1 atgtcttcaa gtgtttatga gtcgatcatt cagactagag cctcagtctg
51 gggatcaact gcatctggta aagctgttgt agattcttac tggattcacg
101 aacttggtac tggttctcaa ctagttcaga cccagctgta ttctgattca
151 agaagcaaaa gtagctttgg ctatactgca aaagtggggg atcttccttg
201 tgaagaagaa gagattcttt ctcagcatgt gtatatccct atttttgatg
251 atattgattt tagcatcaat attgatgact ctgttctggc actatctgtt
301 tgctcaaata cagtcaatgc taacggagtg aaacatcaag gtcatttgaa
351 ggttttgtct cctgctcagc tccactctat tggatctatc atgaacagat
401 ctgatattac agaccgattc cagctccaag aaaaagacat aattcccaat
451 gacagataca ttgaagctgc aaacaaaggc tctttgtctt gtgtcaaaga
501 gcatacctat aagatcgaga tgtgctataa tcaagcttta ggcaaagtga
551 atgttctatc tcctaacaga aatgtccatg aatggctgta cagtttcaag
601 ccaaatttca atcaagttga aagcaacaac agaactgtga attctcttgc
651 agtgaaatct ctgctcatgt cagcagaaaa caacatcatg cctaactctc
701 aagcttttgt caaagcttcc actgattctc atttcaagct gagcctctgg
751 ctaagggttc caaaggtttt gaagcagatt tccagtcaga aattgttcaa
801 agtcgcagga gatgagacaa ataaaacatt ttatttatct attgtctgca
851 ttccaaacca taacagtgtt gagacagctt taaacattac tgttatttgc
901 aagcatcagc ttccaattcg taaatgtaaa gctccttttg aattatcaat
951 gatgttttct gatttaaagg agccttacaa cattgttcat gatccttcat
1001 atccccaaag gattgttcat gctttgcttg aaactcacac atcttttgca
1051 caggttcttt gcaacaactt gcaagaagat gtgatcatct acaccttgaa
1101 caaccatgag ctaacttctg gaaagctaga tttaggtgaa agaaccttga
1151 attacagtga agatgcctac aaaaggaaat atttcctttc aaaaacactt
1201 gaatgtcttc catctaacac acaaactatg tcttatttag acagcattca
1251 aattccttcc tggaagatag actttgccag gggagaaatt aaaatttctc
1301 cgcaatctat tccagttgca aaatctttgt taaagcttga tttaagcggg
1351 atcaaaaaga aagaatctaa gattaaggaa gcatatgctt caggatcaaa
1401 atga