Sequence of DPV Tomato spotted wilt virus

Tomato spotted wilt virus segment S partial NP gene for nucleocapsid, isolate P242, genomic RNA

ACC No: FR693148

Dated: 2011-03-23 | Length: 774 | CRC: -504877955

                
ID   FR693148; SV 1; linear; genomic RNA; STD; VRL; 774 BP.
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AC   FR693148;
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DT   22-SEP-2010 (Rel. 106, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE   Tomato spotted wilt virus segment S partial NP gene for nucleocapsid,
DE   isolate P242, genomic RNA
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KW   .
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OS   Tomato spotted wilt virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-774
RA   Moury B.;
RT   ;
RL   Submitted (21-SEP-2010) to the EMBL/GenBank/DDBJ databases.
RL   Moury B., Institut National de Recherche Agronomiq, Station de Pathologie
RL   Vegetale, Domaine St Maurice, BP94, F-84143 Montfavet Cedex, FRANCE.
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RN   [2]
RA   Tentchev D., Verdin E., Marchal C., Jacquet M., Aguilar J.M., Moury B.;
RT   "Evolution and structure of Tomato spotted wilt virus populations: evidence
RT   of extensive reassortment and insights into emergence processes";
RL   J. Gen. Virol. 92(Pt 4):961-973(2011).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .774
FT                   /organism="Tomato spotted wilt virus"
FT                   /segment="S"
FT                   /isolate="P242"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /isolation_source="Capsicum"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:11613"
FT   CDS             1. .>774
FT                   /gene="NP"
FT                   /product="nucleocapsid"
FT                   /db_xref="GOA:E1Y6A3"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:E1Y6A3"
FT                   /protein_id="CBX24234.1"
FT                   /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT                   KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT                   VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT                   VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT                   NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLTELA"
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SQ   Sequence 774 BP; 253 A; 134 C; 174 G; 213 T; 0 other;

fr693148 Length: 774  23-MAR-2011  Type: N  Check: 4154  ..

       1  atgtctaagg ttaagctcac taaggaaagc attgttgctt tgttgacaca
      51  aggcaaagac cttgagtttg aggaagatca gaatctggta gcattcaact
     101  tcaagacttt ttgtctagaa aaccttgacc agatcaaaaa gatgagcgtt
     151  atttcatgtc tgacattcct gaagaatcgt cagagcataa tgaaggttat
     201  taagcagagt gattttactt ttggtaaaat taccataaaa aaaacttcag
     251  acaggattgg agccactgac atgaccttca gaaggcttga tagcttgatc
     301  agggtcaggc ttgttgagga aactgggaat tctgagaatc tcaatactat
     351  caaatctaag attgcttccc accctttgat tcaagcctat ggattacctc
     401  ttgacgatgc aaagtctgtg aggcttgcca taatgctggg aggtagctta
     451  cctcttattg cttcagttga tagctttgag atgatcagtg ttgtcttggc
     501  tatatatcag gatgcaaaat acaaggacct cgggatcgac ccaaagaagt
     551  atgacaccag ggaagcttta ggaaaagtct gcactgtgct gaaaagcaaa
     601  gcatttgaga tgaatgaaga tcaggtgaag aaggggaaag agtatgctgc
     651  tatacttagc tccagcaatc ctaatgctaa aggaagtatt gctatggaac
     701  attacagtga aactcttaac aagttctatg aaatgtttgg ggttaaaaaa
     751  caagcaaaac tcacagaact tgct