Sequence of DPV Tomato spotted wilt virus

Tomato spotted wilt virus segment S partial NP gene for nucleocapsid, isolate P52-1, genomic RNA

ACC No: FR693221

Dated: 2011-03-23 | Length: 774 | CRC: -117121273

                
ID   FR693221; SV 1; linear; genomic RNA; STD; VRL; 774 BP.
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AC   FR693221;
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DT   22-SEP-2010 (Rel. 106, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE   Tomato spotted wilt virus segment S partial NP gene for nucleocapsid,
DE   isolate P52-1, genomic RNA
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KW   .
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OS   Tomato spotted wilt virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-774
RA   Moury B.;
RT   ;
RL   Submitted (21-SEP-2010) to the EMBL/GenBank/DDBJ databases.
RL   Moury B., Institut National de Recherche Agronomiq, Station de Pathologie
RL   Vegetale, Domaine St Maurice, BP94, F-84143 Montfavet Cedex, FRANCE.
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RN   [2]
RA   Tentchev D., Verdin E., Marchal C., Jacquet M., Aguilar J.M., Moury B.;
RT   "Evolution and structure of Tomato spotted wilt virus populations: evidence
RT   of extensive reassortment and insights into emergence processes";
RL   J. Gen. Virol. 92(Pt 4):961-973(2011).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .774
FT                   /organism="Tomato spotted wilt virus"
FT                   /segment="S"
FT                   /isolate="P52-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /isolation_source="Capsicum"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:11613"
FT   CDS             1. .>774
FT                   /gene="NP"
FT                   /product="nucleocapsid"
FT                   /db_xref="GOA:E1Y6H6"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:E1Y6H6"
FT                   /protein_id="CBX24307.1"
FT                   /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT                   KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT                   VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT                   VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT                   NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA"
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SQ   Sequence 774 BP; 250 A; 134 C; 177 G; 213 T; 0 other;

fr693221 Length: 774  23-MAR-2011  Type: N  Check: 3098  ..

       1  atgtctaagg ttaagctcac taaggaaagc attgttgctt tgttgacaca
      51  aggcaaagac cttgagtttg aggaagatca gaatctggta gcattcaact
     101  tcaagacttt ttgtctggaa aaccttgacc agatcaaaaa gatgagtgtt
     151  atttcatgtc tgacattcct gaagaatcgt cagagcataa tgaaggttat
     201  taagcaaagt gattttactt ttggtaaaat taccataaag aaaacttcag
     251  acaggattgg agccactgac atgaccttca gaaggcttga tagcttgatc
     301  agggtcaggc ttgttgagga aactgggaat tccgagaatc tcaatactat
     351  caaatctaag attgcttccc accctttgat tcaagcctat ggattacctc
     401  ttgatgatgc aaagtctgtg aggcttgcca taatgctggg aggtagctta
     451  cctcttattg cctcagtcga tagctttgag atgatcagtg ttgtcttggc
     501  tatatatcag gatgcaaaat acaaggacct tgggatcgac ccaaagaagt
     551  atgacaccag ggaagcctta gggaaagttt gcactgtgct gaaaagcaaa
     601  gcatttgaaa tgaatgaaga tcaggtgaag aaggggaaag agtatgctgc
     651  tatacttagc tccagcaatc ctaatgctaa aggaagtatt gctatggaac
     701  attacagtga aactcttaac aagttctatg aaatgtttgg ggttaaaaaa
     751  caggcaaaac tcgcagaact tgct