Sequence of DPV Tomato spotted wilt virus

Tomato spotted wilt virus segment S partial NP gene for nucleocapsid, isolate SO46, genomic RNA

ACC No: FR693255

Dated: 2011-03-23 | Length: 774 | CRC: 455334702

                
ID   FR693255; SV 1; linear; genomic RNA; STD; VRL; 774 BP.
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AC   FR693255;
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DT   22-SEP-2010 (Rel. 106, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
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DE   Tomato spotted wilt virus segment S partial NP gene for nucleocapsid,
DE   isolate SO46, genomic RNA
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KW   .
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OS   Tomato spotted wilt virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-774
RA   Moury B.;
RT   ;
RL   Submitted (21-SEP-2010) to the EMBL/GenBank/DDBJ databases.
RL   Moury B., Institut National de Recherche Agronomiq, Station de Pathologie
RL   Vegetale, Domaine St Maurice, BP94, F-84143 Montfavet Cedex, FRANCE.
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RN   [2]
RA   Tentchev D., Verdin E., Marchal C., Jacquet M., Aguilar J.M., Moury B.;
RT   "Evolution and structure of Tomato spotted wilt virus populations: evidence
RT   of extensive reassortment and insights into emergence processes";
RL   J. Gen. Virol. 92(Pt 4):961-973(2011).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .774
FT                   /organism="Tomato spotted wilt virus"
FT                   /segment="S"
FT                   /isolate="SO46"
FT                   /mol_type="genomic RNA"
FT                   /country="France"
FT                   /isolation_source="Solanum lycopersicum"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:11613"
FT   CDS             1. .>774
FT                   /gene="NP"
FT                   /product="nucleocapsid"
FT                   /db_xref="GOA:E1Y6L0"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:E1Y6L0"
FT                   /protein_id="CBX24341.1"
FT                   /translation="MSKVKLTKENIVALLTQSKDLEFEEDQNLVAFNFKTFCLENLDQI
FT                   KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT                   VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT                   VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT                   NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA"
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SQ   Sequence 774 BP; 257 A; 132 C; 170 G; 215 T; 0 other;

fr693255 Length: 774  23-MAR-2011  Type: N  Check: 2086  ..

       1  atgtctaagg tcaagctcac taaggaaaac attgttgctt tgttgacaca
      51  aagcaaagat cttgaatttg aggaagatca gaatctggta gcattcaact
     101  tcaagacttt ttgtctggaa aaccttgacc agatcaagaa gatgagcatt
     151  atttcatgtc tgacattcct gaagaatcgt cagagtataa tgaaggttat
     201  taagcaaagt gattttactt ttggtaaaat taccataaag aaaacttcag
     251  acaggattgg agccactgac atgaccttca gaaggcttga tagcttgatc
     301  agggtcaggc ttgtcgagga aactgggaat tctgagaatc tcaacactat
     351  caaatctaag attgcttctc accctctgat tcaagcctat ggattacctc
     401  ttgatgatgc aaagtctgtg aggcttgcca taatgctggg aggtagctta
     451  cctcttattg cttcagttga tagctttgaa atgatcagtg ttgtcttggc
     501  tatatatcag gatgcaaaat acaaagacct cgggattgat ccaaagaagt
     551  atgacaccag ggaagcccta gggaaagttt gcactgtgct aaaaagcaaa
     601  gcatttgaaa tgaatgaaga tcaggtgaag aaagggaaag agtatgctgc
     651  tatacttagc tccagcaatc ctaatgctaa aggaagtatt gctatggaac
     701  attacagtga aactcttaac aagttctatg aaatgtttgg ggttaaaaaa
     751  caggcaaaac ttgcagaact tgct