Sequence of DPV Passion fruit woodiness virus

Passion fruit woodiness virus partial gene for polyprotein, CP gene region, strain Ugandan, isolate 69c

ACC No: FR694182

Dated: 2013-04-23 | Length: 1720 | CRC: -265464080

                
ID   FR694182; SV 1; linear; genomic RNA; STD; VRL; 1720 BP.
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AC   FR694182;
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DT   29-SEP-2010 (Rel. 106, Created)
DT   23-APR-2013 (Rel. 116, Last updated, Version 2)
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DE   Passion fruit woodiness virus partial gene for polyprotein, CP gene region,
DE   strain Ugandan, isolate 69c
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KW   .
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OS   Passion fruit woodiness virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1720
RA   Winter S.;
RT   ;
RL   Submitted (28-SEP-2010) to the INSDC.
RL   Winter S., DSMZ, Plant Virus Department, Messeweg 11/12, 38104, GERMANY.
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RN   [2]
RA   Ochwo-Ssemakula M.K.N., Sengooba T., Hakiza J.J., Adipala E., Edema R.,
RA   Redinbaugh M.G., Aritua V., Winter S.;
RT   "Characterization and Distribution of a Potyvirus Associated with Passion
RT   Fruit Woodiness Disease in Uganda";
RL   Plant Dis. 96(5):659-665(2012).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1720
FT                   /organism="Passion fruit woodiness virus"
FT                   /host="Passiflora edulis x P. flavicarpa"
FT                   /strain="Ugandan"
FT                   /isolate="69c"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Mbarara"
FT                   /collected_by="MKN Ochwo-Ssemakula"
FT                   /identified_by="S, Winter"
FT                   /db_xref="taxon:31732"
FT   CDS             <19. .1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:E1Y6T6"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:E1Y6T6"
FT                   /protein_id="CBX24847.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVIAMYYACIKQKWTCDDIQERLVFFANG
FT                   DDIILAVQENDEWLLDTLTQSFSELGLNYDFSERSKERTDLWFMSHRAILVDGMYIPKL
FT                   EPERIVSILEWDRSKELMHRTEAICASMIEAWGYGDLLREIRKFYLWLLEKPEFKELAA
FT                   NGKTPYIAETALKKLYTDKDANVHEIQEYLRVIDFEQFEDSMESVSLQSGKKDEEIDAG
FT                   KDKEKSKEQKNTEQPGRVTSTPPTSIKERDVGASSSGKVVPRLRKIAQRMNLPTVGERV
FT                   ILDLDHLIEYKPSQTDLFNTRATKSQFAAWYDKVKQEYELDDNQMGVVMNGFMVWCIDN
FT                   GTSPDVNGVWVMMDGQEQVEYPLKPIVENAKPTLRQIMHHFSDAAEAYIEMRNSEEFYM
FT                   PRYGLLRNLRDKSLARYAFDFYEVNSKTSERAREAVAQMKAAALANVNTRMFGLDGNVA
FT                   TTSENTERHTARDVNQNMHTLLGMGPVQ"
FT   mat_peptide     652. .1476
FT                   /product="coat protein"
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SQ   Sequence 1720 BP; 545 A; 323 C; 435 G; 417 T; 0 other;

fr694182 Length: 1720  23-APR-2013  Type: N  Check: 2504  ..

       1  taatacgact cactataggg gaataatagt gggcagccat caacagtcgt
      51  tgacaacaca ctcatggttg ttattgctat gtactatgcg tgtataaagc
     101  aaaagtggac atgtgacgat attcaagaaa gattggtgtt ctttgcaaat
     151  ggggatgata tcatacttgc agttcaagaa aatgatgaat ggttgttgga
     201  cactctcaca caatcatttt ctgaacttgg tctcaactac gacttctctg
     251  agcgatccaa ggaacggaca gatttgtggt ttatgtcaca tcgcgccatt
     301  ttggtggatg ggatgtatat tcccaaacta gagccagaac gcatcgtatc
     351  aatactggaa tgggatcgca gcaaggagtt gatgcataga acggaagcta
     401  tctgcgcttc catgattgag gcatggggtt atggtgactt gcttagagag
     451  atcagaaagt tctacttatg gttacttgaa aaacctgagt ttaaagaact
     501  ggcagcaaat ggaaagacac catacatagc ggagactgca ctgaagaagc
     551  tgtacactga caaggatgcg aatgttcatg aaatccaaga atacctgagg
     601  gttattgatt ttgaacaatt tgaggacagc atggaatcag tctcactgca
     651  gtcaggtaag aaagacgagg agatcgacgc aggtaaagat aaggagaaaa
     701  gcaaggagca aaagaacacc gaacaacctg gaagagtcac gtccactcca
     751  ccaacaagca ttaaggaaag agacgttgga gcaagttcaa gtggaaaggt
     801  cgtaccacga ttgcgaaaaa tcgcacaaag gatgaatctg ccaacagttg
     851  gtgaaagagt tatattggac ttggatcatc tcattgagta caagccaagt
     901  cagacagatc tgttcaacac tcgcgcaaca aagagtcaat ttgctgcgtg
     951  gtatgacaag gtgaaacagg agtatgagct ggacgacaat cagatggggg
    1001  tcgtaatgaa tggattcatg gtgtggtgca ttgacaatgg aacatcaccg
    1051  gatgtgaacg gagtgtgggt gatgatggat gggcaagagc aagttgaata
    1101  cccgttgaag ccaattgtgg agaatgcaaa accaaccttg cggcaaatca
    1151  tgcaccattt ttcggatgcc gcagaagcgt acattgaaat gagaaattct
    1201  gaagagttct acatgcctag gtatggacta cttcgaaatt tgagggacaa
    1251  aagcttggct cggtacgcat ttgattttta cgaagtcaac tcaaagactt
    1301  ctgagagagc cagagaagcg gttgcacaga tgaaagcagc agccctcgcc
    1351  aacgttaaca ctaggatgtt tggcctagat ggtaacgtgg caaccaccag
    1401  cgaaaatact gaaaggcata ctgcacgtga tgtaaatcag aacatgcata
    1451  ctcttttggg tatgggacca gtacagtaaa ggattggtaa actctccaca
    1501  gttagcattt cgcaacgcta gtatctacgt atagtaaata gtactttaag
    1551  gttcaatcag tgtggttata ccacctcgca ttatcttaaa tagagtggcg
    1601  ttgccaccgt atgttatgtt actattcgct tgtgatagca ggagaagcca
    1651  ctgccatacc ggagctgtca gagtggttac accacgcgta ctgtccgagg
    1701  tactgcaatg aatattctcg