Sequence of DPV Avian orthoreovirus

Avian orthoreovirus segment S3, strain AVS-B, genomic RNA

ACC No: FR694199

Dated: 2010-12-23 | Length: 1202 | CRC: 1413999719

                
ID   FR694199; SV 1; linear; genomic RNA; STD; VRL; 1202 BP.
XX
AC   FR694199;
XX
DT   23-DEC-2010 (Rel. 107, Created)
DT   23-DEC-2010 (Rel. 107, Last updated, Version 1)
XX
DE   Avian orthoreovirus segment S3, strain AVS-B, genomic RNA
XX
KW   .
XX
OS   Avian orthoreovirus
OC   Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus.
XX
RN   [1]
RP   1-1202
RA   Banyai K.;
RT   ;
RL   Submitted (29-SEP-2010) to the EMBL/GenBank/DDBJ databases.
RL   Banyai K., Hungarian Academy of Sciences, Veterinary Medical Research
RL   Institute, Hungaria krt. 21., Budapest, H-1143, HUNGARY.
XX
RN   [2]
RA   Banyai K., Dandar E., Dorsey K.M., Mato T., Palya V.;
RT   "The genomic constellation of a novel avian orthoreovirus strain associated
RT   with runting-stunting syndrome in broilers";
RL   Virus Genes 0:0-0(2010).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1202
FT                   /organism="Avian orthoreovirus"
FT                   /segment="S3"
FT                   /strain="AVS-B"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /db_xref="taxon:38170"
FT   CDS             31. .1134
FT                   /gene="sigma-B"
FT                   /product="sigma-B protein"
FT                   /db_xref="UniProtKB/TrEMBL:E7AXT8"
FT                   /protein_id="CBX25031.1"
FT                   /translation="MEVRVPNFHSFVEGITSSYLQTPACWNAQTAWDTVTFHVPDVIRV
FT                   GNAYCCSQCCGVLYYGTLPSDGNYFPHHKCHQQQFRTDTPLLRYVRIGRTTEHLLDQYA
FT                   VALESIAEHYDEISQRMVDEPENDEVTPLDIVTRTESIRSDKAVDPDFWTYPLERRSDD
FT                   SRRDIASACWKMIDASSRSLTLPNCLVSPSVHSRSVFGQMQTTTTIYDVAASGKAVKFS
FT                   PMVATLAQRDAGPVTLANADPADGVYSFWTSHFAFSPLIGGVGITGQYARESYHHVGHP
FT                   VIGSGKKASHYRNLFMEAWRGWSKSAFACATGMEPAECESRLRGHARTMLGRSLPNVCD
FT                   DDVAQQSGAVLASLQKTTKFTVVECGW"
XX
SQ   Sequence 1202 BP; 267 A; 309 C; 311 G; 315 T; 0 other;

fr694199 Length: 1202  23-DEC-2010  Type: N  Check: 995  ..

       1  gctttttgag tccttagcgt gcaagccgca atggaggtac gtgtgccaaa
      51  ctttcactcg ttcgttgaag gaataacatc cagttactta cagactcctg
     101  cttgttggaa tgcacaaaca gcctgggaca ctgtgacctt tcatgtccct
     151  gatgtcatta gagtcggtaa cgcgtactgt tgttctcagt gctgcggtgt
     201  actttactac ggaactctgc catccgacgg gaattacttc cctcatcaca
     251  aatgtcatca gcaacagttt aggactgata ccccgctact gcgatacgta
     301  aggatcggca gaacgactga gcatttgctg gatcagtatg ccgtcgcttt
     351  ggagtctatc gccgaacact atgatgagat cagccaacgt atggttgatg
     401  agcctgagaa tgatgaagtt acgccccttg acatcgtaac gcgcaccgag
     451  tctatcagaa gtgacaaggc agtggacccg gacttttgga cctatccact
     501  tgagcgacgc tctgatgact ctcgccggga tatcgcctca gcatgctgga
     551  aaatgattga tgcgtcctca cgtagtctga ccctccccaa ctgtcttgtt
     601  tctccatctg tgcattcacg ttccgtcttt ggtcaaatgc aaacgaccac
     651  caccatatac gatgttgctg cgtctggaaa ggcagttaag ttttctccga
     701  tggttgctac cctcgctcaa cgcgatgctg ggcctgtgac gctcgcaaac
     751  gctgatccag ctgacggcgt atactcgttt tggacatcac actttgcctt
     801  ttcgccactc attggtggag tcgggattac agggcaatat gctcgcgagt
     851  cataccacca cgtgggtcat ccggtaattg ggagcggtaa gaaggcgtcg
     901  cactacagaa atctgttcat ggaagcgtgg cgtgggtggt cgaagtccgc
     951  ttttgcgtgt gctacaggta tggagcctgc tgaatgtgag tcccgtttga
    1001  gaggacacgc ccgcaccatg ctcggacggt ctctaccaaa tgtctgtgat
    1051  gatgatgtcg ctcaacagtc tggtgctgtg ctagcatctc tgcagaagac
    1101  taccaaattc actgtggtgg agtgtggttg gtaagtgcct ccgggtcaaa
    1151  atgcacatag gctcccacct atgtgacggt tagcgggact cgcctattca
    1201  tc