Sequence of DPV Okra yellow vein mosaic virus
Bhendi yellow vein mosaic virus complete sequence, isolate Himachal
ACC No: FR694925
Dated: 2010-10-04 | Length: 2739 | CRC: 97776817
ID FR694925; SV 1; circular; genomic DNA; STD; VRL; 2739 BP.
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AC FR694925;
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DT 04-OCT-2010 (Rel. 106, Created)
DT 04-OCT-2010 (Rel. 106, Last updated, Version 1)
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DE Bhendi yellow vein mosaic virus complete sequence, isolate Himachal
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KW complete genome.
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OS Bhendi yellow vein mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2739
RA Kumar Y.;
RT ;
RL Submitted (01-OCT-2010) to the EMBL/GenBank/DDBJ databases.
RL Kumar Y., Plant Virus Lab, Floriculture Division, Institute of Himalayan
RL Bioresource Technology (CSIR), PO Box 6, Palampur, Himachal Pradesh 176061,
RL INDIA.
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RN [2]
RA More P., Kumar Y., Hallan V., Zaidi A.A.;
RT "Characterization and infectivity of Bhendi yellow vein mosaic virus,
RT isolated from Himachal Pradesh";
RL Unpublished.
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FH Key Location/Qualifiers
FH
FT source 1. .2739
FT /organism="Bhendi yellow vein mosaic virus"
FT /host="Abelmoschus esculentus"
FT /isolate="Himachal"
FT /mol_type="genomic DNA"
FT /country="India:Palampur, Himachal Pradesh"
FT /isolation_source="host leaf"
FT /collected_by="More Prashant"
FT /identified_by="More Prashant"
FT /clone="Ok1"
FT /PCR_primers="fwd_seq: rca, rev_seq: rca"
FT /db_xref="taxon:120168"
FT CDS 121. .486
FT /gene="V2"
FT /product="pre-coat protein"
FT /protein_id="CBX25662.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL
FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT ETQNVPDVQKSGCSTGM"
FT CDS 281. .1051
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="CBX25663.1"
FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEHALVKKFVRVNNYVVYNQQEAGKYENH
FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(1054. .1458)
FT /gene="C3"
FT /product="replication enhancer protein"
FT /protein_id="CBX25664.1"
FT /translation="MDSRTGERITAAQAKNGVYIWKVPNPLYFKILNHDNRPFTTNMDI
FT ITIRIHFNYNLRKALGIHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISINL
FT VIKAVEHVLYNVINKTMYVDQYSDIQFKLY"
FT CDS complement(1151. .1603)
FT /gene="C2"
FT /product="transcription activator protein"
FT /protein_id="CBX25665.1"
FT /translation="MRSSSPSKNHCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN
FT CHNHGFSHRGTHHCSSGKEWRLYLEGSKSPLFQDPQPRQPSIHDEHGHNNNQDPFQLQP
FT TESSGNTQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCNLN"
FT CDS complement(1500. .2591)
FT /gene="C1"
FT /product="rep"
FT /function="replication initiator protein"
FT /protein_id="CBX25666.1"
FT /translation="MAPPKQFQIYAKNYFLTYPTCSLTKDEALSQLQNLQTPVNKKYIR
FT ICREFHENGEPHLHVLIQFEGKYQCKNNRFFNLISPTRSAHFHPNIQGAKSSSDVKSYI
FT AKDGDILDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSESLRVIKELAPKDFVLQFH
FT NLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEEWVSENVVDAAARPLRPQSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNNALKNWAVKNAIFITLEEPL
FT YSGTNQSTAQGSEETQQEEESRS"
FT CDS complement(2132. .2434)
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="CBX25667.1"
FT /translation="MGNLIFTCSSSSRANTNAKITDSSTSYPQPGQHISIQTFRELNPA
FT PTSSPTSLRTGTFSTGANFRSTEDQQEEGNKQPTTLTPQHLTREVSQSLLESLRN"
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SQ Sequence 2739 BP; 720 A; 536 C; 650 G; 833 T; 0 other;
fr694925 Length: 2739 04-OCT-2010 Type: N Check: 3792 ..
1 accggatggc cgcgcgattt tttttagtgg tgggtccaga acgcacgacg
51 atgcagactc aaagcttaga taacgctcct ttggctataa gtacttgcgc
101 actaagttta aattcaaaac atgtgggatc cactattaaa cgagttcccg
151 gatacggttc acgggtttcg ttgtatgcta tctgtaaaat atttgcaact
201 tttgtcgcag gattattctc cagatacgct tgggtacgag ttaatacggg
251 atttaatttg tattttacgc tcccgtaatt atgtcgaagc gagctgccga
301 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg
351 gcagcccata caccagccgt gctgctgccc ccattgtccg cgtcacaaaa
401 caacaggcat ggacaaacag gcctatgaac aggaaaccca gaatgtaccg
451 gatgtacaga agtccggatg ttccacgggg atgtgagggt ccctgtaagg
501 tacagtcgtt tgaatctcga cacgatgtcg ttcatattgg taaggtaatg
551 tgtatttcgg atgttacgcg tggagtcggt ttgacccatc gtataggtaa
601 gcgtttttgt gtcaagtcag tttatgtttt aggtaaaata tggatggacg
651 agaacatcaa gaccaagaac catacgaatt cggtgatgtt tttccttgtt
701 cgtgatcgac gaccggtaga taaaccacaa gattttggtg aagtatttaa
751 tatgtttgat aacgagccta gtacggcgac cgtgaagaac atgcataggg
801 accggtacca ggtgttgagg aaatggcatg caaccgttac tggtggacaa
851 tatgcgagta aggagcacgc tttggtcaag aagtttgtta gggttaacaa
901 ctacgttgtt tacaaccagc aggaagcagg aaaatacgag aatcacaccg
951 agaatgcatt gatgctttac atggcttgta ctcatgctag caacccagtg
1001 tatgctactc ttaagattag aatatatttt tatgactctg taacgaacta
1051 atattaataa agtttaaatt gtatatctga atattggtct acatacattg
1101 ttttattaat tacattgtac aatacatgtt caacggcttt aataactaaa
1151 ttaattgaga ttacacctag attgttgaga tatttgagga cttgggtttt
1201 gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagattc
1251 ggaaggttag aaaacacttg tgtattccca gagctttccg taggttgtag
1301 ttgaaatgga tcctgattgt tattatgtcc atgttcgtcg tgaatggacg
1351 gttgtcgtgg ttgaggatct tgaaatagag gggatttgga accttccaga
1401 tatagacgcc attctttgcc tgagctgcag tgatgcgttc ccctgtgcga
1451 gaatccatgg ttgtggcagt taattgaaag ataataagaa cacccgcatt
1501 caagatctac tctcctcctc ctgttgcgtc tcttcgcttc cctgtgctgt
1551 actttgattg gtacctgagt acagtggttc ttcgagggtg atgaagatcg
1601 cattcttgac tgcccagttc tttagtgcgt tgttcttttc ctcgtccagg
1651 aattctttat aactgctgtt gggaccagga ttgcagagga agattgttgg
1701 tattccgcct ttaatttgaa ctggcttccc gtactttgta ttagattgcc
1751 agtccctttg ggcccccatg aactctttaa agtgcttgag gaagtgcgga
1801 tcaacgtcat caatgacgtt ataccaagcg tcgttactgt atacctttgg
1851 acttagatct aaatgcccac ataaatagtt atgtgggcct aaagacctag
1901 cccacattgt tttcccagta cgactgtcac cctcaattac tatactttga
1951 ggtctcaggg gccgcgcagc ggcgtcgaca acattctcag acacccactc
2001 ttcaagttct tctggaactt gatcgaaaga agaagaggaa aaaggagaaa
2051 cataaggagc tggaggctcc tgaaagatcc tgtctagatt tgcatttaaa
2101 ttatgaaatt gtagtacaaa atctttagga gctagttcct taatgactct
2151 aagagactct gacttacttc ccgcgttaag tgctgcggcg taagcgtcgt
2201 tggctgtttg ttgccctcct cttgctgatc ttccgtcgat ctgaaattcg
2251 ccccagtcga gaatgtcccc gtccttagcg atgtaggact tgacgtcgga
2301 gctggattta gctccctgaa tgtttggatg gaaatgtgct gacctggttg
2351 gggatatgag gttgaagaat cggttatttt tgcattggta tttgccctcg
2401 aactggatga gcacgtgaag atgaggttcc ccattttcat gaaactctct
2451 gcagattcta atgtattttt tgtttactgg tgtctgtagg ttttgtaatt
2501 gggaaagtgc ttcatcttta gtaagagagc aagtgggata agtgaggaaa
2551 taatttttgg catatatctg aaattgtttg ggaggagcca ttgacttggt
2601 caatcggtac ccagatctag tcttatgtca attggtgaac ggtaccctat
2651 atatagtggg tactgaatgg caatatttgt aattatgaaa ataaattcaa
2701 aatcctcacg ctccaaaaag cggccatccg tataatatt