Sequence of DPV Ageratum yellow vein Pakistan alphasatellite

Ageratum conyzoides associated symptomless virus alphasatellite, isolate [Pakistan:17-5:06] Lahore1

ACC No: FR772085

Dated: 2012-01-10 | Length: 1368 | CRC: 910495361

                
ID   FR772085; SV 1; circular; genomic DNA; STD; VRL; 1368 BP.
XX
AC   FR772085;
XX
DT   10-JAN-2012 (Rel. 111, Created)
DT   10-JAN-2012 (Rel. 111, Last updated, Version 1)
XX
DE   Ageratum conyzoides associated symptomless virus alphasatellite, isolate
DE   [Pakistan:17-5:06] Lahore1
XX
KW   .
XX
OS   Ageratum conyzoides associated symptomless alphasatellite
OC   Viruses; Satellites; Satellite Nucleic Acids;
OC   Single stranded DNA satellites; Begomovirus-associated alphasatellites.
XX
RN   [1]
RP   1-1368
RA   Zia ur Rehman M.;
RT   ;
RL   Submitted (29-DEC-2010) to the INSDC.
RL   Zia ur Rehman M., University of the Punjab, School of Biological Sciences,
RL   Lab 10, SBS, University of the Punjab, Lahore54590, PAKISTAN.
XX
RN   [2]
RA   Zia Ur Rehman M., Haider M.S.;
RT   "Begomoviruses infecting hollyhock in Pakistan";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1368
FT                   /organism="Ageratum conyzoides associated symptomless
FT                   alphasatellite"
FT                   /host="Alcea rosea"
FT                   /isolate="[Pakistan:17-5:06] Lahore1"
FT                   /mol_type="genomic DNA"
FT                   /country="Pakistan:Lahore"
FT                   /isolation_source="host leaves"
FT                   /collected_by="Muhammad Zia Ur Rehman"
FT                   /collection_date="2006"
FT                   /clone="HYB-3 DNA-1"
FT                   /note="alphasatellite"
FT                   /db_xref="taxon:944995"
FT   CDS             80. .1027
FT                   /gene="alpha Rep"
FT                   /product="replication protein"
FT                   /protein_id="CBY88999.1"
FT                   /translation="MPALKAQWWCFTVFFLSATAPDLVPLFENTHVSYACWQEEESPTT
FT                   RRRHLQGYLQLKGQRTLNQVKAIFGELKPHLEKQRARRTDEARDYCMKEETRVSGSFEF
FT                   GDYCPSGSHKRRQRESVIRSPVRMAEENPSVFRRVKAKIAEEEFQKSAHEIQISNLKSW
FT                   QTRLKTLLERDPDDRTIFWVYGPDGGEGKSTFARDLYRSGSWFYTRGGSADNVSYQYIG
FT                   CLGNNIVFDIPRDKKDYLQYSLIEMFKDRLIVSNKYEPLMAPLLNCIHVVVMSNFLPDF
FT                   EKISVDRVHVIPCRPCGVCLKHHNIDNKCDDYID"
XX
SQ   Sequence 1368 BP; 428 A; 264 C; 313 G; 363 T; 0 other;

fr772085 Length: 1368  10-JAN-2012  Type: N  Check: 7171  ..

       1  accccgcctc gagaccccga gctagagacc tgtccgtaca tttcatcttt
      51  tctcttatat ttctgctgtc tgagtaaaca tgcctgccct caaagcccaa
     101  tggtggtgtt tcactgtctt cttcctgtcc gctacggctc ctgacttggt
     151  gcctctgttc gagaacaccc acgtgagtta cgcctgctgg caagaggaag
     201  agtctcccac gactcgacga cgccacctcc aaggctacct gcaattgaag
     251  ggtcagagga ccctgaacca ggtgaaggct atctttgggg aattgaaacc
     301  ccatcttgag aagcagcgag ctcgccgtac tgacgaagct cgcgactatt
     351  gtatgaagga ggaaactagg gtttccgggt cctttgaatt tggggattat
     401  tgccctagtg ggtcccataa acgccggcaa cgagaatcag taattagaag
     451  tccggtgaga atggccgaag aaaatccgtc cgtcttccga cgagtaaagg
     501  caaagattgc tgaggaagaa ttccagaaga gcgcgcatga aattcaaatt
     551  tcaaatctga aatcttggca aacgcgccta aagacgctcc tggagaggga
     601  cccagatgac cgcactatct tctgggttta cggacctgat ggtggggaag
     651  gaaaatccac ctttgccaga gacctgtaca gaagtgggtc ctggttttat
     701  acacgtggtg gctctgcaga taatgttagc taccagtaca taggatgttt
     751  aggaaataat attgtatttg atatccctcg tgataagaag gattatctac
     801  aatatagttt aatagagatg tttaaggata gattaatagt tagtaataag
     851  tatgagccgc ttatggcccc tctacttaat tgtattcatg tcgtagttat
     901  gtctaatttt ctcccagact ttgagaagat tagcgtagat agagtccatg
     951  taatcccatg tagaccatgt ggtgtttgtc ttaaacacca taatattgat
    1001  aataaatgtg atgattatat tgactaaata attttgtttc ttgaagacaa
    1051  gaaagaatga aatgaaaaaa aaaacaaaaa aacatgaacc ttctattatt
    1101  tcaagataaa cagggccgcg cagcggccta tttataaaaa taaaatttaa
    1151  aaggaaataa gaaaaaattg ttttacaaaa acgacgacgt attgaaaaaa
    1201  gtgtaaatgg gaccaaaatg taaatataag aaagttatgt gctcgccaac
    1251  aaaagtaagt gaaagatacg gttaagcgga gtaaaagtta tgaaagttca
    1301  agggtatgcg ttgcaattat tgaggtctct ctgctataaa taacacgtca
    1351  cgaggcgggt gtagtatt