Sequence of DPV Barley yellow mosaic virus

Barley yellow mosaic virus partial gene for polyprotein, VPg gene region, isolate 31196-32, genomic RNA

ACC No: FR848391

Dated: 2012-01-10 | Length: 561 | CRC: -1096222929

                
ID   FR848391; SV 1; linear; genomic RNA; STD; VRL; 561 BP.
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AC   FR848391;
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DT   10-JAN-2012 (Rel. 111, Created)
DT   10-JAN-2012 (Rel. 111, Last updated, Version 1)
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DE   Barley yellow mosaic virus partial gene for polyprotein, VPg gene region,
DE   isolate 31196-32, genomic RNA
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KW   .
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OS   Barley yellow mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Bymovirus.
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RN   [1]
RP   1-561
RA   Kuehne T.;
RT   ;
RL   Submitted (25-MAR-2011) to the INSDC.
RL   Kuehne T., EP, Julius Kuehn-Institute, Quedlinburg, Erwin-Baur-Strasse 27,
RL   06484, GERMANY.
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RN   [2]
RA   Kuehne T., Fomitcheva V.F., Habekuss A., Rabenstein F.;
RT   "Sequence variability of the VPg-encoding region of German isolates of
RT   Barley yellow mosaic virus";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .561
FT                   /organism="Barley yellow mosaic virus"
FT                   /isolate="31196-32"
FT                   /mol_type="genomic RNA"
FT                   /identified_by="Thomas Kuehne"
FT                   /note="pathotype 2"
FT                   /db_xref="taxon:12465"
FT   CDS             <1. .>561
FT                   /product="polyprotein"
FT                   /protein_id="CCA61793.1"
FT                   /translation="GKGNKYRPREDARLMYSTREDATFDAWNEKAKERRKKVTDRAEPE
FT                   PRRAYEKRPYFNFYDLQTDSNILEAIFYTTEGDEFFRTADPNRDMNLVADKLRSFLDTK
FT                   LVVGHHQRKLLEETANVIIKDTKGTAHNMEISQHDPDFLKQNGSGKVGYPEHRGQFRQE
FT                   GVAVTGDYDLEAEFGADADEITLE"
FT   mat_peptide     1. .561
FT                   /product="VPg protein"
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SQ   Sequence 561 BP; 175 A; 128 C; 144 G; 114 T; 0 other;

fr848391 Length: 561  10-JAN-2012  Type: N  Check: 7906  ..

       1  ggcaagggaa acaaataccg ccctcgcgaa gacgctcgcc tgatgtactc
      51  cactagagaa gacgccacct ttgacgcctg gaatgagaaa gcgaaggaaa
     101  gacgcaagaa agtaaccgac agagctgagc cagagcctcg gagagcctat
     151  gagaagagac catacttcaa tttctacgac cttcaaacag atagcaacat
     201  tctggaagct attttctaca ccactgaagg tgatgagttc ttccgaacag
     251  cagaccctaa cagggacatg aacttggttg ctgataaact gcgctctttt
     301  ctcgatacaa agcttgttgt tggacaccat cagcggaagc tactagaaga
     351  gacagctaat gttattatca aggacacgaa gggaactgcg cacaacatgg
     401  aaatctcaca gcatgatcca gattttctga agcagaatgg gtccggcaaa
     451  gttgggtatc cagaacaccg aggacagttt cggcaggaag gagttgccgt
     501  cacaggggat tacgatcttg aagctgagtt tggcgccgat gctgatgaaa
     551  taacgcttga g