Sequence of DPV Cassava brown streak virus

Cassava brown streak virus strain Tanzanian isolate KenE Ham1-like protein gene, partial cds.

ACC No: GQ169758

Dated: 2009-11-14 | Length: 678 | CRC: -1074849178

                
ID   GQ169758; SV 1; linear; genomic RNA; STD; VRL; 678 BP.
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AC   GQ169758;
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DT   29-JUN-2009 (Rel. 101, Created)
DT   14-NOV-2009 (Rel. 102, Last updated, Version 2)
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DE   Cassava brown streak virus strain Tanzanian isolate KenE Ham1-like protein
DE   gene, partial cds.
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KW   .
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OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
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RN   [1]
RP   1-678
RA   Monger W., Alicai T., Ndunguru J., Kinyua Z., Potts M., Reeder R.,
RA   Miano D., Adams I., Boonham N., Glover R., Smith J.;
RT   "A comparative study of the genome of two strains of Cassava brown streak
RT   virus";
RL   Arch. Virol. 0:0-0(2009).
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RN   [2]
RP   1-678
RA   Monger W.A., Glover R.H., Adams I.P., Boonham N.;
RT   ;
RL   Submitted (18-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL   Plant Science, The Food and Environment Research Agency, Sand Hutton, York
RL   YO41 1LZ, UK
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FH   Key             Location/Qualifiers
FH
FT   source          1. .678
FT                   /organism="Cassava brown streak virus"
FT                   /host="cassava"
FT                   /strain="Tanzanian"
FT                   /isolate="KenE"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Namudura, Samia"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .>678
FT                   /codon_start=1
FT                   /product="Ham1-like protein"
FT                   /note="Maf/Ham1"
FT                   /db_xref="InterPro:IPR002637"
FT                   /db_xref="UniProtKB/TrEMBL:C6K8R0"
FT                   /protein_id="ACS71538.1"
FT                   /translation="VVDRPQSLNVVKREEEVTSKFRMGIEAPITFVTGNAQKLKEVKQI
FT                   FGPTIPIVSRKIDLPESQGTVEEIIKEKARVAAELVGGPVLVEDTSLCFDALNGLPGPY
FT                   IKWFLEGIGLEGLYKLVEPYQNRMASALCVFAFVNKVGDDPIIFKGVLRGEIVIPRGPN
FT                   SFGWDPIFQPLDWKRTFAEMMIEEKNMISHRFRALSLVRDFLKSSSYFSFAKGLDRDIF
FT                   IDVQ"
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SQ   Sequence 678 BP; 198 A; 107 C; 179 G; 194 T; 0 other;

gq169758 Length: 678  14-NOV-2009  Type: N  Check: 2897  ..

       1  gtggtagaca gacctcaatc attgaatgtg gttaagagag aggaagaggt
      51  tactagtaaa ttccggatgg ggatcgaagc gccaataaca ttcgtcacag
     101  ggaatgcaca aaaactgaag gaagtgaaac aaatctttgg tcccaccatt
     151  ccgattgttt ctcggaaaat tgatttgcca gaatcacaag ggacggttga
     201  ggaaattatc aaagaaaaag cacgagtagc tgctgaactt gttggagggc
     251  cagttcttgt agaagataca agtttgtgtt ttgatgctct caatggtctc
     301  ccaggaccat acatcaagtg gtttttggaa gggattggac tggagggact
     351  atataagttg gtggagccat atcagaatag aatggctagt gctctctgcg
     401  tgtttgcttt tgtaaacaaa gttggtgatg atcctataat ttttaaaggt
     451  gtgctaagag gtgagattgt aatcccacgc ggaccaaatt cgtttggatg
     501  ggatccaatt tttcagccac tggattggaa aaggacattt gctgagatga
     551  tgattgagga gaagaacatg atatcccatc gattccgagc tctgtcgttg
     601  gtgagagatt tcttgaagag ctcgagctat tttagttttg caaagggctt
     651  agatcgtgac atctttattg atgttcaa