Sequence of DPV Cassava brown streak virus

Cassava brown streak virus strain Tanzanian isolate TanAB30 Ham1-like protein gene, partial cds.

ACC No: GQ169759

Dated: 2009-11-14 | Length: 678 | CRC: 2077129758

                
ID   GQ169759; SV 1; linear; genomic RNA; STD; VRL; 678 BP.
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AC   GQ169759;
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DT   29-JUN-2009 (Rel. 101, Created)
DT   14-NOV-2009 (Rel. 102, Last updated, Version 2)
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DE   Cassava brown streak virus strain Tanzanian isolate TanAB30 Ham1-like
DE   protein gene, partial cds.
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KW   .
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OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
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RN   [1]
RP   1-678
RA   Monger W., Alicai T., Ndunguru J., Kinyua Z., Potts M., Reeder R.,
RA   Miano D., Adams I., Boonham N., Glover R., Smith J.;
RT   "A comparative study of the genome of two strains of Cassava brown streak
RT   virus";
RL   Arch. Virol. 0:0-0(2009).
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RN   [2]
RP   1-678
RA   Monger W.A., Glover R.H., Adams I.P., Boonham N.;
RT   ;
RL   Submitted (18-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL   Plant Science, The Food and Environment Research Agency, Sand Hutton, York
RL   YO41 1LZ, UK
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FH   Key             Location/Qualifiers
FH
FT   source          1. .678
FT                   /organism="Cassava brown streak virus"
FT                   /host="cassava"
FT                   /strain="Tanzanian"
FT                   /isolate="TanAB30"
FT                   /mol_type="genomic RNA"
FT                   /country="Tanzania:Mogabiri, Tarime"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .>678
FT                   /codon_start=1
FT                   /product="Ham1-like protein"
FT                   /db_xref="InterPro:IPR002637"
FT                   /db_xref="UniProtKB/TrEMBL:C6K8R1"
FT                   /protein_id="ACS71539.1"
FT                   /translation="VVDRPQSLNVAKREEEVTSKFRMGIEAPITFVTGNAQKLKEVKQI
FT                   FGPTIPIVSRKIDLPESQGTVEEIIKEKARVAAELVGGPVLVEDTSLCFDALNGLPGPY
FT                   IKWFLEGIGLEGLYKLVEPYQNRMASALCVFAFVNKVGDDPIIFKGVLRGEIVMPRGPN
FT                   SFGWDPIFQPLDWKRTFAEMMTEEKNMISHRFRALSLVRDFLKSSSYFSFAKGLDRDIF
FT                   IDVQ"
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SQ   Sequence 678 BP; 198 A; 106 C; 180 G; 194 T; 0 other;

gq169759 Length: 678  14-NOV-2009  Type: N  Check: 3902  ..

       1  gtggtagaca gacctcaatc attgaatgtg gctaagagag aggaagaggt
      51  tactagtaaa ttccggatgg ggatcgaagc gccaataaca ttcgtcacag
     101  ggaatgcaca aaaactgaag gaagtgaaac aaatctttgg tcccaccatt
     151  ccgattgttt ctcggaaaat tgatttgcca gaatcacaag ggacggttga
     201  ggaaattatc aaagaaaaag cacgagtagc tgctgaactt gttggagggc
     251  cagttcttgt agaagataca agtttgtgtt ttgatgctct caatggtctc
     301  ccaggaccat acatcaagtg gtttttggaa gggattggac tggaaggact
     351  atataagttg gtggagccat atcagaatag aatggctagt gctctctgtg
     401  tgtttgcttt tgtaaacaaa gttggtgatg atcctataat ttttaagggt
     451  gtgttaagag gtgagattgt aatgccacgc ggaccaaatt cgtttggatg
     501  ggatccaatt tttcagccac tggattggaa aaggacattt gctgagatga
     551  tgactgagga gaagaacatg atatcccatc gattccgagc tctgtcgttg
     601  gtgagagatt tcttgaagag ctcgagctat tttagttttg caaagggctt
     651  agatcgtgac atctttattg atgttcaa