Sequence of DPV Ugandan cassava brown streak virus

Cassava brown streak virus strain Ugandan isolate TanC9 Ham1-like protein gene, partial cds.

ACC No: GQ169760

Dated: 2009-11-14 | Length: 678 | CRC: -1419943024

                
ID   GQ169760; SV 1; linear; genomic RNA; STD; VRL; 678 BP.
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AC   GQ169760;
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DT   29-JUN-2009 (Rel. 101, Created)
DT   14-NOV-2009 (Rel. 102, Last updated, Version 2)
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DE   Cassava brown streak virus strain Ugandan isolate TanC9 Ham1-like protein
DE   gene, partial cds.
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KW   .
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OS   Cassava brown streak virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Ipomovirus.
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RN   [1]
RP   1-678
RA   Monger W., Alicai T., Ndunguru J., Kinyua Z., Potts M., Reeder R.,
RA   Miano D., Adams I., Boonham N., Glover R., Smith J.;
RT   "A comparative study of the genome of two strains of Cassava brown streak
RT   virus";
RL   Arch. Virol. 0:0-0(2009).
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RN   [2]
RP   1-678
RA   Monger W.A., Glover R.H., Adams I.P., Boonham N.;
RT   ;
RL   Submitted (18-MAY-2009) to the EMBL/GenBank/DDBJ databases.
RL   Plant Science, The Food and Environment Research Agency, Sand Hutton, York
RL   YO41 1LZ, UK
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FH   Key             Location/Qualifiers
FH
FT   source          1. .678
FT                   /organism="Cassava brown streak virus"
FT                   /host="cassava"
FT                   /strain="Ugandan"
FT                   /isolate="TanC9"
FT                   /mol_type="genomic RNA"
FT                   /country="Tanzania:Kyamunyorwa, Muleba"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1. .>678
FT                   /codon_start=1
FT                   /product="Ham1-like protein"
FT                   /db_xref="InterPro:IPR002637"
FT                   /db_xref="UniProtKB/TrEMBL:C6K8R2"
FT                   /protein_id="ACS71540.1"
FT                   /translation="TEDLREKEKPELRIESHDGTSRMQMKFPVTFVTGNLGKLAEVRSI
FT                   LGIANDVVAKNIDLPEVQGTPDEVVRKKAQLAVKMTNSPVLVEDTCLCFNAFNGLPGPY
FT                   IKWFLKELGLEGVVKMLSAFEDKSAYALCTFAYVHSELSDPIVFKGVVNGEIVPPRGNN
FT                   GFGWDPIFKPDGCGCTFAEMPSGIKNEFSHRRRALEKVKLFLDNLVVRQEEKRASMALT
FT                   IDVQ"
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SQ   Sequence 678 BP; 208 A; 94 C; 184 G; 192 T; 0 other;

gq169760 Length: 678  14-NOV-2009  Type: N  Check: 5394  ..

       1  actgaggatt tgagagaaaa agagaagcct gagttgagga ttgagagtca
      51  tgatggaaca tctcgaatgc aaatgaagtt tccagttaca tttgtgacag
     101  gaaatttggg gaaattagca gaagtgagat ctattcttgg cattgcaaat
     151  gatgttgtag ctaagaacat tgatttacca gaagtgcaag ggactccaga
     201  tgaagttgtg agaaagaagg cacaattagc agtgaagatg actaatagtc
     251  ctgttttagt tgaagatacg tgtctctgct ttaatgcttt taatgggctt
     301  cctgggccat acatcaaatg gttcttaaaa gaattggggc ttgaaggagt
     351  tgttaaaatg ctatcagcat ttgaagataa atcagcgtac gcgttgtgta
     401  catttgcata tgtgcatagc gagttgtctg atccaattgt gtttaaagga
     451  gttgtgaatg gtgagattgt gccaccgcga ggcaacaatg gctttggctg
     501  ggatccaata tttaaaccag atgggtgtgg ttgcactttt gcagaaatgc
     551  caagtggcat taagaatgaa ttttcccata gaaggagagc cctagagaaa
     601  gtcaaattgt tccttgataa cctggtggtg aggcaagagg agaagagggc
     651  aagtatggct ttaacgattg atgttcag