Sequence of DPV Bayou virus
Bayou virus isolate HV F0260003 segment L, complete sequence.
ACC No: GQ244526
Dated: 2012-12-02 | Length: 6554 | CRC: -875817549
ID GQ244526; SV 1; linear; viral cRNA; STD; VRL; 6554 BP.
XX
AC GQ244526;
XX
DT 02-DEC-2012 (Rel. 115, Created)
DT 02-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE Bayou virus isolate HV F0260003 segment L, complete sequence.
XX
KW .
XX
OS Bayou virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus.
XX
RN [1]
RP 1-6554
RA Cajimat M.N.B., Richter M.H., Milazzo M.L., Fulhorst C.F.;
RT "Evolutionary history of the large (L) genomic segments of hantaviruses
RT native to the New World";
RL Unpublished.
XX
RN [2]
RP 1-6554
RA Cajimat M.N.B., Jung M., Milazzo M.L., Gerrard S.R., Fulhorst C.F.;
RT ;
RL Submitted (04-JUN-2009) to the INSDC.
RL Pathology, University of Texas Medical Branch, 301 University Blvd.,
RL Galveston, TX 77555-0609, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6554
FT /organism="Bayou virus"
FT /segment="L"
FT /host="Oryzomys palustris (marsh rice rat)"
FT /isolate="HV F0260003"
FT /mol_type="viral cRNA"
FT /country="USA"
FT /isolation_source="lung"
FT /collection_date="1996"
FT /db_xref="taxon:37962"
FT 5'UTR 1. .30
FT primer_bind 1. .24
FT gene 31. .6492
FT /gene="RdRp"
FT CDS 31. .6492
FT /codon_start=1
FT /gene="RdRp"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="ADE10200.1"
FT /translation="MEKYREIHQRIRDVAPGTGSAVECMDLLDRLYAVRHDLVDQMIKH
FT DWSDNKDVETPIGQVLLMAGVPNDIIQGMEKKIIPNSPTGQVLKSFFRMTPDNYKITGN
FT HIEFVEVTVTADVARGIREKRLKYEGGLRFIEELLELEVRKGNLQQVYRITFNVVAVKT
FT DGSNISTQWPSRRNDGVVQQMRLVQADINYVREHLIKQDERSSLEAMFNLKFHVTGPKL
FT RYFSIPDYRPQPLCNPTIDGLLNYCKQWLTEEHEFVFKEVSGGSVMNVFERNEIEHRDR
FT YIESRKPRNFLLLQTTIQGTYLPSTISSDQCNTRIGCLEICKNTPETPVQALATDIAFK
FT YVSLDKEEIINYYNPRIHFKPSANVKEPGTLKLGLSQLNPLSKAILDNIGKHKSEKGLF
FT GQTIESINISSQIQLNECSKVIEQILSNLEINIGDLSENVPLPKKTTGVDELLGKFYEN
FT EIIKYMLGILRKTVAWHIGHLVRDITESLIAHSGLRRSKYWSVHAYDHGNMILFILPSK
FT SLEVAGSYIRFFTVFKDGIGLVDNDNIDSRAEIDGITWVYSKVMSIDLNRLLALNISFE
FT KALLATATWFQYYTEDQGHFPLQHALRSVFSFHFLLCVSQKMKICAIFDNLRYLIPSVT
FT SLYSGYELLIEKFFERPFKSALDVYLYSIIKSLLVSLAQNNKVRFYSKVRLLGLTVDQS
FT TVGASGVYPSLMSRVVYRHYRSLISEATTCFFLFEKGLHGNLTEEAKIHLETVEWARKF
FT NEKEDKYGDILMKEGYTIELIEKQNVIIEQQLFCQEVVELSAAELNKYLQAKSQVLCAN
FT IMNKHWDKPYFSQVRNISLKGMSGSLQEDGHLSSSVTLIEAIRFLNFSQVNPNVIDMYE
FT QTKHQKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYFDAIAKVVPEEYISYGGD
FT RKVLNIQSALEKALRWASGISEIVTSTGKKIRFKRKLMYVSADATKWSPGDNSAKFRRF
FT TQAIYDGLSDNKLKCCVVDALKNIYETEFFMSRKLHRYIDNMESKSESVEDFLSFFSGG
FT VSAPVKGNWLQGNLNKCSSLFGVAVSLLFKRVWLELFPDLECFFEFAHHSDDALFIYGY
FT LEPEDDGTDWFMYVSQQIQAGQYHWHAVNQEMWKSMFNLHEHLLLMGSIKVSPKKTTVS
FT PTNAEFLSTFFEGCAVSVPFVKILLGSLSDLPGLGFFDDLAAAQSRCVKALDLGACPQL
FT AQLAIVLCTSKVERLYGTADGMINSPISFLKVNKAHIPIPLGGDGSMSIMELATAGIGM
FT ADKNILKNAFYSYKHTRRDGDRYILGLFKFLMSLSDDVFQHDRLGEFSFVGKVQWKVFT
FT PKSEFEFYDQYSATYLQTWSKQHPVYDYIIPRGRDNLLVYLVRKLNDPSIVTAMTMQSP
FT LQLRFRMQAKQHMKVCKLDGEWVTFREVLASADSFASSYQPSEKDLDLFNTLVSCTFSK
FT EYAWKDFLNEVRCEVTTARHVHRPKVARTFTVREKDQAIQNPITSVIGYKYASTVDEIS
FT DVLDSAFFPDSLSADLQVMKEGVYRELGLDIGLPDVLKRIAPLLYKAGKSRIVIVEGNV
FT EGTAESICSYWLKNMSLIKTIKVKPRKEVLKAVSLYGAKDNLSIQDDLAATRICIEVWR
FT WCKANNQSVQDWFTALYFENQTLYDWIERFRRKGVIPVDPEIQCMGLLLYDVLGYRSVL
FT QMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEIFWDKKEYVLET
FT SITQKHVLRLMMEEVSKELTRCGMRFKTEQVNQTRSLVLFKTESGFEWGKPNVPCIVYK
FT HCALRTGLRTKQPINKEFMINIQSEGFRAIAQMDVESPRFLLAHAYHTLRDVRFQAVQA
FT VGNVWFKTEQHKLFINPIISSGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNEL
FT LALINKNNILDLNGIEETSEGYSTVTSMSSKQWSEEMSLMSDDDIDDDEEFTIALDDID
FT FEQVDLDEDIQHFLQDESAYVGDLLIQTEEVEVKKIRGVTRILEPVKLIKSWVSKGLAI
FT DKVYNPVGILLMTRYMSKNYNFHAVPLALMNPYDLTEFESVVKGWGETVNERFPEIDQE
FT AQILVREQNIQPEDILPDSLFSFRHVDVLLKRLFPRDPISSFY"
FT 3'UTR 6493. .6554
FT primer_bind complement(6523. .6554)
XX
SQ Sequence 6554 BP; 2144 A; 1042 C; 1457 G; 1911 T; 0 other;
gq244526 Length: 6554 02-DEC-2012 Type: N Check: 6973 ..
1 gtagactccg agatagagaa ttccaaaaaa atggagaaat acagagagat
51 acatcagaga atcagggatg ttgcaccagg gactggctca gcagtagaat
101 gtatggactt attagaccgg ctgtacgctg taagacatga tctagtagat
151 cagatgataa agcatgattg gtctgataac aaagatgtag agacacctat
201 tgggcaagtg ttgctgatgg ctggtgtacc taatgatata attcagggga
251 tggaaaagaa aataattcca aatagtccga caggtcaggt attaaaaagc
301 ttctttagaa tgacacctga taattataaa ataacaggaa atcatattga
351 atttgttgag gtgacagtca ctgcagatgt tgcaagagga atccgtgaaa
401 aaaggcttaa gtatgaaggg gggctccgtt tcattgagga gttgctggaa
451 ttagaagtta gaaagggtaa tctacagcaa gtttatagaa taactttcaa
501 tgtagtggca gttaagacag atgggtcgaa catttcaact cagtggccta
551 gcaggcgcaa tgatggtgtt gtccaacaaa tgagattagt gcaggctgat
601 ataaattatg ttagagagca cttaataaag caagatgaga gatcatccct
651 agaagcaatg ttcaacctga aattccatgt tacaggccca aagctaaggt
701 attttagcat accagattat aggccccaac ctctctgtaa tccgacaatt
751 gatggtttgt taaattactg caagcagtgg ctaactgagg aacatgaatt
801 tgtcttcaaa gaagtgagcg ggggaagtgt gatgaatgta tttgaaagaa
851 atgaaataga gcatagagat aggtacattg aatcacgtaa gccacggaat
901 ttcctattac tgcagactac aatacaaggc acttacttgc cttctaccat
951 aagttcagat caatgtaata caaggatagg ctgccttgaa atctgtaaga
1001 acacaccaga gacaccagtc caggcacttg ctacagacat agcattcaag
1051 tatgtgagtt tagataaaga ggagatcata aactattata acccaagaat
1101 ccactttaag ccgagtgcta atgttaaaga gcctggtact ttgaaattag
1151 gcctatcaca gcttaaccct ttgtcaaagg ctatccttga taatattggc
1201 aaacacaagt cagagaaagg actatttgga caaactattg aaagtattaa
1251 catctctagt cagatccagt taaatgaatg ctctaaagtt attgaacaaa
1301 tactatcaaa tctagaaatc aacataggtg accttagtga aaatgtgcca
1351 ttgcctaaga aaacaacagg tgttgatgag ttattaggga agttttatga
1401 aaacgaaatc atcaaatata tgcttggaat tttaagaaag actgttgcat
1451 ggcatattgg tcatctggtg agagatataa cagaaagttt aattgctcat
1501 tcaggcctgc gtcgctcaaa atactggtct gtccatgctt atgatcatgg
1551 gaatatgata ttatttatcc ttccgtccaa atcacttgaa gttgcaggct
1601 cttatataag gttttttaca gtattcaagg atgggatagg actagtggat
1651 aacgacaaca tagactcaag ggctgaaatt gatgggatca catgggttta
1701 ttctaaagta atgagtattg atcttaatag gttgctggca ttaaatatct
1751 cattcgagaa agcattgctg gcaactgcaa cttggtttca gtattatact
1801 gaagaccaag ggcactttcc tctacagcat gctttacgat ctgttttctc
1851 cttccatttt ctactctgtg tatcgcagaa gatgaagata tgtgctatat
1901 ttgataatct aaggtactta attccttctg ttacatcact atattctggt
1951 tatgagttat taattgagaa gttctttgag agaccattta agagtgcatt
2001 ggatgtatat ctatattcga ttataaaaag cctattagtg agtcttgcgc
2051 aaaataataa agtaagattt tattcaaagg tcaggctact cgggttgaca
2101 gttgatcaat ccactgttgg tgctagtgga gtttacccct cattgatgtc
2151 acgagtggtt tatagacatt acaggagttt aatttctgag gcgacaacat
2201 gcttttttct ttttgagaaa gggcttcatg gaaacttgac agaagaggca
2251 aagatccatc tagaaacagt cgagtgggca agaaaattta acgagaagga
2301 agataaatat ggtgatatat tgatgaaaga aggttataca attgaattga
2351 tagagaaaca gaatgtgatt atagagcagc aactattttg ccaagaagtt
2401 gtagagctta gtgcagctga gttgaataag tatctccagg caaaatccca
2451 ggtattatgt gctaatataa tgaataaaca ctgggataaa ccctatttca
2501 gtcaagtacg aaatattagc ttaaaaggga tgtctggttc tttgcaggaa
2551 gatgggcatc tatcctcaag tgtaacactc atagaagcca tacgatttct
2601 gaacttttca caagtgaacc ccaatgttat tgatatgtat gagcagacta
2651 aacatcaaaa ggcacaggct agaattgtaa gaaagtacca gaggacagag
2701 gctgaccgag gctttttcat tacaacactc ccaactagag tacggctaga
2751 gatcatagag gattattttg atgcaattgc taaggttgtc cctgaagaat
2801 atatctctta cggtggtgat agaaaagtat taaatattca gtcggcatta
2851 gaaaaagctt tacggtgggc atctggaatt tctgagatag taacaagtac
2901 aggaaagaag ataaggttta aacgaaagct aatgtatgtg agtgcagatg
2951 ccacaaagtg gtcacctggt gataactctg cgaagtttag gcgattcaca
3001 caggcaattt acgatgggct tagtgataac aaactaaaat gctgtgtagt
3051 tgatgcattg aagaacatat atgaaacaga gttcttcatg tcacgaaaat
3101 tgcaccgtta tatcgataat atggagtcca agtctgaatc agttgaagat
3151 tttttatcat ttttttctgg tggggtttct gcccctgtta agggcaattg
3201 gttgcagggc aatctgaaca aatgttcatc cttatttggt gttgcagtat
3251 cacttttatt taaacgtgta tggttggaat tattcccaga ccttgaatgc
3301 ttttttgagt ttgcccacca ttctgatgat gcacttttta tatatggata
3351 tctggaaccg gaagatgatg gtactgactg gttcatgtat gtgtcgcagc
3401 agatacaagc agggcaatat cattggcatg cagtcaacca ggaaatgtgg
3451 aaaagtatgt ttaatttaca tgaacatctc ctcctaatgg gttccattaa
3501 ggtatcacca aagaaaacaa cagtgtcacc tactaatgcc gagttcttgt
3551 caacattttt tgaaggttgt gcagtttcag ttccctttgt caagatcctc
3601 ttaggttcct tatcagacct acccggtctt ggtttttttg atgacttggc
3651 tgcagcacaa agcaggtgtg tgaaggccct agacctaggg gcctgcccac
3701 aactagctca actagctatt gtgctatgta caagtaaagt tgaaagacta
3751 tatggaacag ctgatggtat gataaatagc cctatttcat tcttaaaggt
3801 taataaagcc catattccta tccctttggg gggtgatggt tcaatgtcaa
3851 tcatggagct ggcaactgca gggataggaa tggcagataa gaatatacta
3901 aagaatgcat tttattcata taaacataca aggagagatg gtgatagata
3951 tattttaggt ttatttaagt ttttaatgtc cctgagtgat gatgtattcc
4001 agcatgatag gttaggcgag tttagttttg taggaaaggt tcaatggaaa
4051 gtttttaccc caaaatcaga gtttgaattt tatgatcagt attcggcaac
4101 atacttacag acatggtcga aacagcaccc agtatatgac tatataatac
4151 cacggggaag ggataatctt ctggtgtacc tggttcgtaa actaaatgac
4201 ccaagtatag taacagcaat gacaatgcag tcaccccttc aattgagatt
4251 taggatgcag gcaaaacaac atatgaaagt ttgcaagcta gatggtgaat
4301 gggtaacatt tcgtgaagta ctggcatcag cggatagctt tgcatctagt
4351 taccagccta gtgaaaagga cctagacttg tttaatacat tagtcagttg
4401 tacattctct aaggagtatg catggaaaga ttttcttaat gaagttagat
4451 gtgaggtaac cacagctaga catgtccata ggcctaaggt agcaagaaca
4501 ttcactgtaa gggagaagga tcaagcaata cagaacccta taacctcagt
4551 cattggatat aagtatgcat caacagtaga tgagattagt gatgttctag
4601 atagtgcctt ttttcctgac tcattatctg cagatcttca ggtgatgaaa
4651 gaaggagttt acagagaact gggtttagac ataggactac cagatgtctt
4701 gaagaggatt gcaccattat tatataaagc tggtaaatca agaatagtta
4751 tagttgaagg gaacgtggag ggtactgcag aatcaatatg tagttattgg
4801 cttaagaaca tgtcactaat taagacaata aaggtcaaac ccaggaagga
4851 ggttttgaag gctgtatccc tctatggagc taaagacaat ctcagtatac
4901 aggatgacct agcagccact agaatctgta ttgaagtatg gagatggtgc
4951 aaggcaaaca atcagagtgt ccaggattgg ttcactgcat tatacttcga
5001 aaatcaaaca ctatatgatt ggattgagag atttcgcaga aaaggggtga
5051 ttcctgttga tccagagata cagtgtatgg gtctattgct ttatgatgtg
5101 ctaggctata gaagtgtatt acagatgcaa gcaaatagaa gagcttattc
5151 aggtaagcaa tatgatgcct attgtgtgca aacatataat gaggaaacaa
5201 agctttatga gggtgatttg agggtaacat ttaattttgg gttagactgt
5251 gcaaggcttg agatattttg ggacaagaaa gagtatgtgc ttgagacttc
5301 tattacacag aagcatgtgt taagactgat gatggaagag gtctcaaaag
5351 aactaacgag gtgcggtatg aggtttaaga cggagcaggt aaatcaaact
5401 aggagcttag tcctgtttaa gactgaatct gggttcgaat ggggtaagcc
5451 taatgtccca tgtattgtct acaaacactg cgcactgagg acaggattga
5501 ggacaaagca gcctattaat aaagaattta tgattaacat ccaatcagaa
5551 ggttttagag cgattgcaca gatggatgta gagagcccaa ggttcctact
5601 agctcatgct tatcatactc taagagatgt aagattccaa gcagtccagg
5651 cagtaggaaa tgtgtggttt aaaacagaac agcataaact cttcattaat
5701 cctataattt cctctggtct ccttgagaat ttcatgaaag gattgcctgc
5751 agcaataccg cctgctgcat attcattaat aatgaataag gcaaagatct
5801 ctgtagattt attcatgttt aatgagttgc tagcattaat caacaaaaat
5851 aatatcttag atttgaatgg tatagaagag acatcagaag gttatagtac
5901 agtcacatcc atgtcaagca aacaatggtc tgaggaaatg agtttgatgt
5951 ctgatgatga tattgatgat gatgaggaat ttacaattgc tttagatgat
6001 attgattttg agcaggttga tttagatgag gacatacagc atttcttgca
6051 ggatgaatct gcatatgttg gtgacctttt aatccaaact gaagaagtgg
6101 aggttaagaa gataaggggt gtgacccgta tattagagcc tgtaaaatta
6151 ataaagagtt gggtatcaaa gggccttgct atagataaag tttataatcc
6201 cgttgggatc ttattaatga ctaggtatat gtcaaaaaat tataatttcc
6251 atgctgtccc tttagcactg atgaacccat atgacctgac agaatttgag
6301 agtgttgtga aaggttgggg agagactgta aatgaaagat ttccagaaat
6351 tgaccaggag gcacaaattc ttgtgagaga gcaaaatata cagccagaag
6401 acatattgcc agattcttta ttctctttta gacatgttga tgtcctacta
6451 aaaaggctat tcccacgtga ccccatatca tcattttatt aagtctttat
6501 tacctttatt ttgaataaat ttgcctattg ctcttttctc ggagcatact
6551 acta