Sequence of DPV Broome virus
Broome virus segment L1, complete sequence.
ACC No: GQ258977
Dated: 2010-05-20 | Length: 3947 | CRC: 626154973
ID GQ258977; SV 1; linear; genomic RNA; STD; VRL; 3947 BP.
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AC GQ258977;
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DT 19-MAY-2010 (Rel. 104, Created)
DT 20-MAY-2010 (Rel. 104, Last updated, Version 2)
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DE Broome virus segment L1, complete sequence.
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KW .
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OS Broome virus
OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Orthoreovirus;
OC unclassified Orthoreovirus.
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RN [1]
RP 1-3947
RX PUBMED; 20350736.
RA Thalmann C.M., Cummins D.M., Yu M., Lunt R., Pritchard L.I., Hansson E.,
RA Crameri S., Hyatt A., Wang L.F.;
RT "Broome virus, a new fusogenic Orthoreovirus species isolated from an
RT Australian fruit bat";
RL Virology 402(1):26-40(2010).
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RN [2]
RP 1-3947
RA Thalmann C.M., Wang L.-F.;
RT ;
RL Submitted (10-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Commonwealth Scientific and Industrial Research Organisation (CSIRO),
RL Livestock Industries Australian Animal Health Laboratory, Private Bag 24,
RL Geelong, Victoria 3220, Australia
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CC GenBank Accession Numbers GQ258977-GQ258986 represent the complete
CC genome of Broome virus from Pteropus scapulatus.
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FH Key Location/Qualifiers
FH
FT source 1. .3947
FT /organism="Broome virus"
FT /segment="L1"
FT /host="Pteropus scapulatus (little red flying fox)"
FT /mol_type="genomic RNA"
FT /country="Australia"
FT /db_xref="taxon:667093"
FT CDS 14. .3907
FT /codon_start=1
FT /product="major core protein"
FT /note="lambda A; ATPase; NTPase; RNA helicase; ssRNA and
FT dsRNA binding"
FT /protein_id="ACU68600.1"
FT /translation="MDAFRTRVKRRRSRAPEGKNTDSGVNSESLNEVKPIHERTDLNVA
FT HNEGSTTNQKSYISDVGHREQRLVVDAPGKVDGYDASDMTLLKKEKEEVIHPVHQKLGG
FT DAANDPNARYNQNSDPARKNSSFSYTPEGNVGLNELERSKRIDHDGGVKTQPVREEVQA
FT MAQSVLSTRPLYGGLPSYNHELNSHVCMVCMRAFMSPEQLAVHQTTHSLGAVSGLMSYE
FT VSQAVIDFVASWSRATATANVKSGISVDEIDDLLLNSAPLLVTWDAGLCTSFTLVPIIP
FT ARTVQDVIAYQWFSSSYNIETPFPQGSVVRIVLQTNWAGQLDHDRGRRVKQLPPTSSNV
FT PLFRQAFNHGLTPSNAFNPRLMRSNVILMCLDVVLDNLHLNRNTAYALDLTAALTANLG
FT AKQLRAIGGDNPGKWYPIMYPSRVRLPNASKTAEFVNHCLEDRVGRFDRSQTFSGAMSD
FT WADTYETLDSLTHLIRTRWYNRLQRMNMTPNEIADALSRCAKHLLTISASQAPSMTRLM
FT PFRVTTPERQLLQIMYFLNVGTNAGLVEPIISNAARMLAKMSPLMINPQLVADAIASVV
FT EQTTNSISPAAALLMRLRPNMADFSDFRRSCICFLYNGMVTTYLDEQSFPVHRGNVLSV
FT DTLIDMFICLMALPMTTDPNGPVKAFMVLANAMYGFENITMDDPNWNQQRAAASFNNPR
FT LWPRCFVQRTIDRARCPVLARWADMIYQYWPRPGATTFGAPDILGSANLFTGPDELLLP
FT FQVTAPNTVSPTLSLVNELCNWRNAVIDMLVGIVNDGRFMINWNPAMRASMTNALTKFK
FT IIRSYTPGYMCELLPIELAALAPILPLQPLQVPYAGLDRNAIPVHMNVSRQAPHEIAQP
FT ALHMSMTQQFVGVPIAVNARPITVALLSGTYPENPPLITNVWYAAALAPLYSHDGLFSH
FT LQHAVVVSEAYQTVIACLSQCTNMRFPVDRVFEWIPQIELGANESANLARHINEAFRMA
FT FGLTDESILLQPFLEGDPRATQLTIAYTNYVGDVRSLTPVIPDSMIAETIVDVGRVLRH
FT EYNCFGICKGDIIIGQLLTESGFNPLAPPSSVVFDETMDDVHVFNHRTIATFGMNGGEM
FT TVEDAAGNHVPLRGRWVMPLDLWQINNAFFKTILPTRLRSGQLMIRLRLGAFPYVLQYF
FT NARDPMDGFDMLQQWFDSISPTGIAPVPFLMPESQDHNVSSGLAIHYIWATEYNDGSLF
FT CTNSSSPATVFGPDKSIPLERYSVLTDEDFPPRGSQLPAVIDFYGLIRRYNLETPPLTA
FT AVTTYGSGLPMSV"
XX
SQ Sequence 3947 BP; 991 A; 789 C; 936 G; 1231 T; 0 other;
gq258977 Length: 3947 20-MAY-2010 Type: N Check: 2033 ..
1 gtcaaatttc gggatggatg cgtttcgcac tcgtgtaaag cgccgtagat
51 cacgtgctcc ggaagggaaa aatacagaca gtggtgttaa tagtgaaagt
101 ttaaatgaag tcaaaccaat tcacgaacgg acggacttaa acgtagctca
151 taatgaaggt tctaccacca atcaaaagtc atatataagt gatgttggtc
201 accgagaaca gcgtttggtg gttgatgcgc cgggtaaagt tgatggttat
251 gacgccagtg acatgacatt gttgaagaag gaaaaagagg aggtgattca
301 tcctgtacat cagaaattag gtggagatgc tgccaatgat cccaatgcgc
351 gctataacca aaattcagat ccggctagga aaaattcatc tttttcatat
401 acacctgagg gtaatgtggg gttaaatgag ttggagcgca gtaagcgtat
451 cgatcatgat ggaggtgtca aaacacaacc agtgcgagag gaagtgcagg
501 cgatggcaca gagtgttctt agtactcgac cattatatgg agggttgcct
551 agttataatc atgaattgaa cagtcacgtt tgcatggtgt gtatgcgcgc
601 ctttatgtcg cctgaacaat tggctgttca tcaaaccact cactctcttg
651 gtgcagttag tggattaatg agttatgaag taagtcaagc tgttatagat
701 ttcgtagcct catggagtcg tgctactgcg acggcaaatg ttaagtctgg
751 aatttctgtg gatgaaattg atgatttatt gttgaatagt gcaccattgc
801 tggtcacgtg ggatgctggt ctgtgtactt cgttcacttt ggttcctata
851 attccagcta gaacggtgca agatgtgatc gcatatcagt ggttttcatc
901 atcatataac attgagacac cttttcctca aggtagcgtt gttaggatcg
951 tgttacagac taattgggcg ggtcagttgg atcatgatag gggtcgtcgt
1001 gtgaaacaat taccaccaac atcatctaat gtacctttgt ttaggcaggc
1051 ttttaatcat ggcttgaccc cgagtaatgc tttcaatcca cggctgatgc
1101 gcagtaacgt cattttgatg tgcttagacg tagtcttaga caatttgcat
1151 ttgaatagga atacagctta tgctctcgat ttgactgctg cccttactgc
1201 taatttaggt gctaagcaat tgcgtgctat tggtggtgat aatcctggta
1251 aatggtatcc aattatgtac ccttcacgtg tgaggttgcc taatgcatcg
1301 aaaacagcag agtttgtcaa tcattgcttg gaagatcgtg ttggtagatt
1351 tgaccgtagt caaacatttt cgggcgcgat gtctgactgg gctgatacct
1401 atgaaacttt ggattcgttg actcatttga tacgtactcg ctggtacaat
1451 cgtcttcagc gaatgaatat gactcctaat gagattgctg atgcgttgtc
1501 acggtgcgca aaacatttgt taaccatttc tgctagtcag gctccatcta
1551 tgaccagatt aatgcctttt cgagttacca cgcctgagcg tcaactgtta
1601 cagattatgt attttctcaa tgttggcaca aatgctgggc ttgttgagcc
1651 gataatttcc aatgctgctc gtatgcttgc gaaaatgtca cctttaatga
1701 tcaatcccca actggtagcg gatgctattg cctccgttgt tgagcaaaca
1751 accaattcaa ttagtccagc ggcagcattg ttgatgcgtt tgcgtcctaa
1801 catggctgat ttttctgatt tcagacgatc gtgtatatgt ttcttgtata
1851 atgggatggt gacgacatac ttagacgagc agtcttttcc ggtacatcgt
1901 ggaaatgttc ttagtgttga taccctaatt gatatgttca tttgcttaat
1951 ggctttaccc atgactactg atcctaatgg acccgttaaa gcattcatgg
2001 tgttggctaa cgccatgtat ggatttgaaa atattaccat ggatgacccc
2051 aactggaatc agcaacgtgc tgctgcttcg tttaacaacc cacggttatg
2101 gccccgatgt tttgttcagc gcactattga ccgcgctcgt tgtccagtac
2151 tcgcgagatg ggctgatatg atttaccaat actggccgcg tcccggtgct
2201 acaacattcg gagctcctga cattttgggt agcgctaatt tatttactgg
2251 tcctgatgag ttgttgttac cttttcaggt gactgcacct aataccgtgt
2301 cacctacgtt gagtttagtg aatgaattat gtaattggcg aaatgcagtc
2351 attgacatgc tagtgggtat agttaacgat ggacgtttta tgataaattg
2401 gaatcctgct atgcgtgctt caatgactaa cgcattgaca aaatttaaga
2451 tcattcgttc atacactcct ggttatatgt gtgagttgct gcctattgag
2501 ttagctgctt tggcgcctat actgcctctt cagcctttac aagtacctta
2551 tgctggttta gacagaaacg ccatacccgt gcatatgaat gtgtctcgtc
2601 aagcgcctca tgagattgcg caacccgctt tgcacatgtc aatgacccaa
2651 caatttgtgg gtgtccctat tgctgttaac gctcgtccaa ttactgtggc
2701 tttattgtct ggtacatatc cggagaatcc accattgata actaatgtgt
2751 ggtatgccgc cgcgctggca cctttgtatt cgcacgatgg tcttttctca
2801 catttgcagc atgctgtggt agtttctgaa gcgtatcaga cggtgatagc
2851 gtgcttatcg caatgcacca atatgagatt tcctgtggat cgagtgtttg
2901 aatggatccc tcaaatcgaa ttgggagcta acgaaagcgc caatttagcg
2951 cgtcacatta atgaggcgtt tagaatggca ttcggcctaa ctgatgagag
3001 catcttgtta caacccttcc ttgaaggaga tcctcgagca actcagctga
3051 ctattgccta tacgaattat gtgggtgatg tgcgaagtct gactccagtt
3101 ataccggatt caatgatagc tgaaacaatt gttgatgttg ggcgtgtgtt
3151 acgtcacgaa tataattgtt tcggtatttg caaaggggac atcatcatcg
3201 ggcagttatt aactgaatct ggtttcaacc ctctagctcc gccatcaagt
3251 gttgtgtttg atgagactat ggatgatgtc catgtgttta atcatcggac
3301 tattgcaact tttggcatga atggaggtga gatgactgtg gaggatgctg
3351 cgggtaatca cgtgccttta cggggtcgtt gggtgatgcc actcgatttg
3401 tggcaaataa ataatgcatt ctttaaaact attttgccaa cccgtttgcg
3451 atctggtcaa ttgatgatac gtttacgatt gggtgctttt ccatatgtgt
3501 tacaatattt taatgctagg gatcctatgg acggttttga tatgttacag
3551 cagtggtttg attctatttc gccaactggt atagctccag taccattttt
3601 gatgccggaa tcacaggatc acaatgtttc atctgggctg gccattcatt
3651 atatttgggc tacggagtac aacgatgggt ctctgttctg cacaaattcg
3701 tcatctccag ctactgtgtt tggacctgat aaaagcatac ccttagaacg
3751 ttactcagtg ttgacagatg aagattttcc acctcgtggg agtcaattac
3801 ctgctgttat tgatttttat ggactaattc ggcgatataa cctagagaca
3851 ccgccattaa ctgctgctgt gacaacatat ggatctggtc taccgatgag
3901 tgtgtaatga acctcccgcc gctattcgat agcggtttgt attcatc