Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate TA6-07 polyprotein gene, partial cds.

ACC No: GQ281392

Dated: 2012-12-31 | Length: 1082 | CRC: 804864788

                
ID   GQ281392; SV 1; linear; genomic RNA; STD; VRL; 1082 BP.
XX
AC   GQ281392;
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DT   31-DEC-2012 (Rel. 115, Created)
DT   31-DEC-2012 (Rel. 115, Last updated, Version 1)
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DE   Turnip mosaic virus isolate TA6-07 polyprotein gene, partial cds.
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KW   .
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OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1082
RA   Chen J., Li X., Zhu Q., Yin X., Li X.;
RT   "3'- terminal genomic sequence of Turnip mosaic virus";
RL   Unpublished.
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RN   [2]
RP   1-1082
RA   Chen J., Li X.;
RT   ;
RL   Submitted (16-JUN-2009) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1082
FT                   /organism="Turnip mosaic virus"
FT                   /host="radish"
FT                   /isolate="TA6-07"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .895
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /protein_id="ACT35574.1"
FT                   /translation="GAEVCVYHQAGETLDAGLTEEQKQAEKERKERERSEKERERQRQL
FT                   ALKKGKNAAQEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKYEKRVALNLDHLILYT
FT                   PEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWV
FT                   MMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTD
FT                   MSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTT
FT                   EDVNRNMHNLLGVKGL"
FT   mat_peptide     <1. .28
FT                   /product="NIb"
FT                   /note="polymerase"
FT   mat_peptide     29. .892
FT                   /product="CP"
FT                   /note="coat protein"
XX
SQ   Sequence 1082 BP; 332 A; 207 C; 280 G; 263 T; 0 other;

gq281392 Length: 1082  31-DEC-2012  Type: N  Check: 6710  ..

       1  tggtgctgaa gtgtgtgttt atcaccaggc aggtgagacg cttgatgccg
      51  gtctaacaga agagcagaag caggctgaaa aggagagaaa ggagagagag
     101  agatcagaga aagagcgaga aaggcaaaga cagctagctc ttaagaaagg
     151  caaaaacgca gcacaagaag agggcgaacg tgacaatgaa gtaaacgccg
     201  gaacttccgg aacttttagc gtgcctagac tcaaaagtct tacgagcaaa
     251  atgcgtgtgc cgaagtatga gaaaagagtt gctctcaacc tcgatcattt
     301  gatcttatac acgccggagc agacagattt atccaacacg cgttcaacgc
     351  ggaagcagtt tgacacttgg tttgaaggtg tcatggctga ctatgagcta
     401  acggaggata aaatgcaaat aattctcaat ggtttaatgg tctggtgcat
     451  tgagaatgga acctccccga acataaacgg aatgtgggtg atgatggacg
     501  gagatgatca ggtggaattc ccgatcaagc cgctcattga ccacgccaaa
     551  cccacattta ggcaaataat ggcccatttc agtgacgtag ctgaagcgta
     601  cattgaaaag cgtaaccagg accgaccata catgccacga tatggtcttc
     651  agcgcaattt aaccgacatg agcttagctc gttacgcgtt tgatttctat
     701  gaaatgactt ctagaactcc aatacgtgcg agagaggcac acatccagat
     751  gaaagcagca gcactgcgtg gcgcaaataa taatttgttc ggcttggatg
     801  gtaacgtcgg cacaacggta gagaacacgg aaaggcatac gaccgaagac
     851  gttaatcgga acatgcataa cttacttggc gttaaggggt tatgaagttg
     901  tatgctagta gactataagt agttaagttt actcgttagt attctcgctt
     951  atgggaaata tgtaagtttg ttaaagcagc cagtgtgact tcgtcatgtg
    1001  tgttgttgtt actttctata ttttcgccga actttttatt ggtgttagcg
    1051  catgtggtga gatactatct cgattgcctt aa