Sequence of DPV Turnip mosaic virus

Turnip mosaic virus isolate TA10-08 polyprotein gene, partial cds.

ACC No: GQ281403

Dated: 2012-12-31 | Length: 1082 | CRC: 1130136692

                
ID   GQ281403; SV 1; linear; genomic RNA; STD; VRL; 1082 BP.
XX
AC   GQ281403;
XX
DT   31-DEC-2012 (Rel. 115, Created)
DT   31-DEC-2012 (Rel. 115, Last updated, Version 1)
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DE   Turnip mosaic virus isolate TA10-08 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1082
RA   Chen J., Li X., Zhu Q., Yin X., Li X.;
RT   "3'- terminal genomic sequence of Turnip mosaic virus";
RL   Unpublished.
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RN   [2]
RP   1-1082
RA   Chen J., Li X.;
RT   ;
RL   Submitted (16-JUN-2009) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1082
FT                   /organism="Turnip mosaic virus"
FT                   /host="radish"
FT                   /isolate="TA10-08"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .895
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /protein_id="ACT35585.1"
FT                   /translation="GVEVCVYHQAGETLDAGLTDEQKQAEKERKEKERAEKERERQKQL
FT                   ALKKGKNAALEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKYEKRVALNLDHLILYT
FT                   PEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWV
FT                   MMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTD
FT                   MSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTT
FT                   EDVNRNIHNLLGVKGL"
FT   mat_peptide     <1. .28
FT                   /product="NIb"
FT                   /note="polymerase"
FT   mat_peptide     29. .892
FT                   /product="CP"
FT                   /note="coat protein"
XX
SQ   Sequence 1082 BP; 337 A; 210 C; 280 G; 255 T; 0 other;

gq281403 Length: 1082  31-DEC-2012  Type: N  Check: 3555  ..

       1  cggtgttgaa gtgtgtgtat atcaccaggc aggtgaaaca cttgatgcag
      51  gcctgacaga tgagcagaaa caggcagaaa aggagaggaa agagaaagag
     101  agagcagaga aagagcgcga aaggcaaaag cagttggcac tcaagaaagg
     151  caaaaacgca gcgttagagg aaggcgaacg cgacaacgaa gtgaacgccg
     201  gaacctctgg aacttttagt gtgcctaggc tcaaaagcct aacgagcaaa
     251  atgcgtgtgc caaagtacga gaaaagagta gccctcaatc tcgatcatct
     301  gattctgtac acgccggagc aaacggatct atccaatacg cgttcaacgc
     351  ggaagcagtt tgacacttgg tttgaaggtg tcatggctga ctacgagcta
     401  acggaggata aaatgcaaat aattctcaat ggtttaatgg tctggtgcat
     451  tgagaatgga acctccccaa atataaacgg aatgtgggtg atgatggacg
     501  gtgatgatca ggtggaattc ccgatcaaac cgctcattga ccacgccaaa
     551  cccacattta ggcaaataat ggcccatttc agtgacgtag ctgaagcgta
     601  cattgaaaag cgtaaccaag accgaccata catgccacga tatggtcttc
     651  agcgcaattt aaccgacatg agcttagctc ggtacgcatt tgatttctat
     701  gaaatgactt ctagaactcc aatacgtgcg agagaggcac acatccagat
     751  gaaagcagca gcactgcgtg gcgcaaataa taatttgttc ggcttggatg
     801  gtaacgtcgg cacaacggta gagaacacgg aaaggcatac gaccgaggac
     851  gttaatcgga acatacataa cttacttggc gttaaggggt tatgaagttg
     901  tatgctagta gactataagt agttaagttt actcgttagt attctcgctt
     951  atgggaaata tgtaagtttg ttaaagcagc cagtgtgact tcgtcatgtg
    1001  tgttgttgtt actttctata ttttcgccga acattttatt ggtgttagcg
    1051  catgtggtga gattgtatct cgattgcctt aa