Sequence of DPV Tomato ringspot virus
Tomato ringspot virus isolate PYB-1 polyprotein gene, partial cds.
ACC No: GQ325249
Dated: 2009-08-06 | Length: 2070 | CRC: -787982836
ID GQ325249; SV 1; linear; genomic RNA; STD; VRL; 2070 BP.
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AC GQ325249;
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DT 06-AUG-2009 (Rel. 101, Created)
DT 06-AUG-2009 (Rel. 101, Last updated, Version 1)
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DE Tomato ringspot virus isolate PYB-1 polyprotein gene, partial cds.
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KW .
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OS Tomato ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Comoviridae; Nepovirus; Subgroup C.
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RN [1]
RP 1-2070
RA Jafarpour B., Sanfacon H.;
RT "Insertion of large amino acid repeats and point mutations contribute to a
RT high degree of sequence diversity in the tomato ringspot virus (genus
RT Nepovirus) X4 protein";
RL Unpublished.
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RN [2]
RP 1-2070
RA Jafarpour B., Sanfacon H.;
RT ;
RL Submitted (24-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Pacific Agri-Food Research Centre, Agriculture and Agri-Food Canada, 4200
RL Highway 97, Summerland, BC V0H 1Z0, Canada
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FH Key Location/Qualifiers
FH
FT source 1. .2070
FT /organism="Tomato ringspot virus"
FT /segment="RNA2"
FT /host="peach yellow bud"
FT /lab_host="Nicotiana benthamiana"
FT /isolate="PYB-1"
FT /mol_type="genomic RNA"
FT /country="USA:California"
FT /isolation_source="infected peach orchard"
FT /collected_by="Dr. A. Rowhani"
FT /db_xref="taxon:12280"
FT CDS <1. .>2070
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="ACT98410.1"
FT /translation="FSAAMNRSQPVQGGFSLPARKGVYVAPTIQGVVRAGLRAQKGFLN
FT AVSTGIVAGARILKSKSQNWFRKSMGIAHEYVEGSLASTILECAGPVVQSKESCAVVAV
FT PPSGEFTSWVPSCTEYVSNFPKLTCSIFTEWQKPRKQPIVVSSPFRKLIDCALIMSGVS
FT LIASVLLLEIAENLAVRQVVRPREMLPCAVFVSEKSLVRLDERSFYLRKYLSPPPYPFG
FT RESFYFQARPRFIGPMLPMVRAVPRIVQQPTMTEELDFEVPSSWSSPLPLFANFKVNRG
FT ACFLQVLPQRVVLPDECMDLLSLFEDQLSEGPLPPFSWSSPLPLFASFKVNRGACFLQV
FT LPQRVVLPDECMDLLSLFEDQLSEGPLPPFSWSSPLPLFASFKVNRGACFLQVLPARRV
FT VPDEFMDVSPFLTTPLVLHQEEESRMVPAVLEAANSIDDVTEAFFDDLECESFYDSYSD
FT EEEAEWAEVPRCKTMSELSTSFTLVGDVEGLRKSHVTFFRRLVTYFRSFEEPLYSSRAF
FT YDVKVKPVYRPKKFEGHIDCTCLDGNMGEWEWRESVDAMWRCPGRLLNAKRTYTRDDWE
FT RVQYLRMGFNEGRYRRNWRILNLEEMDLSLHEYPEIPSAPVQSSLFSRVVDRGATLASG
FT IPFVTRSNCQSSLGTPDLNVHTIHQETPTTLRAPPFTGARNVVGSSDAGANAAPY"
FT mat_peptide <1. .36
FT /product="X3 protein"
FT mat_peptide 37. .1854
FT /product="X4 protein"
FT /note="released after cleavage by the ToRSV proteinase"
FT mat_peptide 1855. .>2070
FT /product="movement protein"
FT /note="directs the cell-to-cell movement of the virus via
FT the formation of tubular structures that traverse the cell
FT wall and contain virus particles"
FT repeat_region 793. .1224
FT /rpt_type=TANDEM
FT /rpt_unit_range=793. .951
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SQ Sequence 2070 BP; 431 A; 474 C; 520 G; 645 T; 0 other;
gq325249 Length: 2070 06-AUG-2009 Type: N Check: 2328 ..
1 tttagtgccg ccatgaacag gtctcagcct gttcaagggg gtttctccct
51 tcctgcccgc aagggcgttt atgtcgctcc caccattcag ggtgtggtgc
101 gtgctgggct tcgtgctcag aagggttttt taaatgccgt ttctactggc
151 attgtggctg gagctcgtat tttaaagagc aaaagtcaaa attggtttag
201 aaagagcatg ggcattgccc atgaatacgt ggagggttct ctggccagca
251 ccattttaga gtgtgctggt ccagttgtgc aaagcaagga gagctgcgct
301 gttgttgcag ttcccccatc tggggagttc acttcttggg ttccctcttg
351 cactgagtat gtgagcaatt ttcctaagct cacatgttct atttttactg
401 aatggcaaaa accgcgcaag cagcccattg ttgtttccag tcctttccgc
451 aagctcatcg attgtgcttt aatcatgagc ggcgttagct taattgcgag
501 cgtcctttta cttgagattg cggaaaatct tgcagtgcga caggtggttc
551 gcccaagaga aatgctgccc tgtgcagttt ttgtctcgga gaaatcctta
601 gtccgattgg acgaacggag tttctatctc cgtaaatatt tgtcaccacc
651 tccctatcct tttggtaggg aaagttttta ttttcaggct aggccccgtt
701 ttattggacc tatgcttcct atggttaggg ctgtaccacg aattgtacaa
751 cagcctacca tgacggagga actcgatttt gaagttcctt cctcatggtc
801 ttctcctttg cctctgtttg cgaattttaa agtgaatagg ggcgcatgtt
851 ttttgcaagt cctgcctcag agggttgttt tacctgatga gtgcatggat
901 ttgctttctc tttttgaaga tcaactatcg gaggggcctt tgcccccctt
951 tagttggtct tcacctttac ctctgttcgc gagtttcaaa gtgaataggg
1001 gcgcatgttt tttgcaagtc ctgcctcaga gggttgtttt acctgatgag
1051 tgcatggatt tgctttctct ttttgaagat caactatcgg aggggccttt
1101 gccccccttt agttggtctt cacctttacc tctgttcgcg agtttcaaag
1151 tgaatagagg cgcatgcttt ttgcaggttt tgcctgcacg cagggtcgtt
1201 cctgatgagt tcatggacgt ctcgcccttt ttgacaactc cactggtatt
1251 gcaccaggaa gaggaatcaa gaatggttcc tgctgtgttg gaagcagcaa
1301 attctatcga cgatgtcacc gaagccttct ttgatgactt ggaatgtgag
1351 tctttctatg actcatattc tgatgaagaa gaagctgagt gggctgaagt
1401 gccaaggtgt aagactatgt ctgaacttag cacttctttt actcttgttg
1451 gtgatgtcga ggggctacgt aagtctcacg tgactttttt ccgtcgcctt
1501 gtgacttatt ttcggtcctt cgaagagccg ctttactctt cacgcgcctt
1551 ttatgacgtg aaggtgaagc cagtttatcg tcccaaaaaa tttgagggac
1601 acatcgattg tacctgcctc gatggcaata tgggcgagtg ggagtggcgc
1651 gaaagcgtcg acgccatgtg gcgttgccca gggcgcttgc tcaatgcaaa
1701 gcgcacatac actcgcgatg attgggagcg tgtgcaatat ttacgcatgg
1751 gcttcaatga gggtagatac cgccgaaatt ggcgcatttt aaaccttgag
1801 gagatggatc tctccttgca tgaatatcca gagattccgt ctgccccagt
1851 acagtcctct cttttttcga gggttgttga taggggagcc accttggcaa
1901 gtggtatccc ctttgtcact cgttctaact gccagtcttc tttaggaact
1951 cctgatttaa atgtacatac tatacatcag gaaaccccta ctacattgcg
2001 agctccacct tttacaggag cgcgcaatgt agtgggatcc tctgatgcgg
2051 gtgcaaatgc tgctccgtac