Sequence of DPV Impatiens necrotic spot virus
Impatiens necrotic spot virus segment S, complete sequence.
ACC No: GQ336989
Dated: 2009-08-18 | Length: 2982 | CRC: 555526430
ID GQ336989; SV 1; linear; genomic RNA; STD; VRL; 2982 BP.
XX
AC GQ336989;
XX
DT 18-AUG-2009 (Rel. 101, Created)
DT 18-AUG-2009 (Rel. 101, Last updated, Version 1)
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DE Impatiens necrotic spot virus segment S, complete sequence.
XX
KW .
XX
OS Impatiens necrotic spot virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RP 1-2982
RA Cheng X.F., Dong J.H., Zhang Z.K.;
RT "Molecular Characterization of Phalaenopsis Isolate of Impatiens Necrotic
RT Spot Virus from Yunnan";
RL Unpublished.
XX
RN [2]
RP 1-2982
RA Cheng X.F., Dong J.H., Zhang Z.K.;
RT ;
RL Submitted (29-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Biotechnology and Genetic Germplasm Institute, Yunnan Academy of
RL Agricultural Sciences, No. 9 Xueyun Road, Kunming, Yunnan Province 650223,
RL China
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FH Key Location/Qualifiers
FH
FT source 1. .2982
FT /organism="Impatiens necrotic spot virus"
FT /segment="S"
FT /host="Phalaenopsis amabilis"
FT /isolate="Phalaenopsis"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collection_date="06-Jun-2006"
FT /db_xref="taxon:11612"
FT gene 79. .1422
FT /gene="NSs"
FT CDS 79. .1422
FT /codon_start=1
FT /gene="NSs"
FT /product="non-structural protein"
FT /protein_id="ACU33927.1"
FT /translation="MSSAMYETIIKSKSSIWGTTSSGKAVVDSYWIHDQSSGKKLVEAQ
FT LYSDSRSKTSFCYTGKVGFLPTEEKEIISENVFVPIFDDIDLNFSFSGDVVEILVRSNT
FT TNTNGVKHQGHLKVLSSQLLRMFEEQIAVPEITSRFGLKESDIFPPNNFIEAANKGSLS
FT CVKEVLFDVKYSNNQSMGKVSVLSPTRSVHEWLYTLKPVFNQSQTNNRTVNTLAVKSLA
FT MSATSDLMSDTHSFVRLNNNKPFKISLWMRIPKIMKSNTYSRFFTLSDESSPKEYYISI
FT QCLPNHNNVETALNITLISKPLLESTPSSSDHKIEMNFSDLKEPYNVIHDMSYPQRIVH
FT SLLEIHTELAQTICDSVQQDIIVFTINEPDLKPKKFELGKETLNYSEDGYGRKYFLSQT
FT LKSLPRNSQTMSYLDSIQMPDWKFDYAAGEIKISPRSEDVLKAISKLD"
FT gene complement(2045. .2833)
FT /gene="N"
FT CDS complement(2045. .2833)
FT /codon_start=1
FT /gene="N"
FT /product="nucleocapsid protein"
FT /protein_id="ACU33928.1"
FT /translation="MNKAKITKENIVKLLTQSDSLEFEETQNEGSFNFTDFFTNNREKI
FT QNMTTASCLSFLKNRQSIMRVIKSADFTFGSVTIKKTRNNSERVGVNDMTFRRLDAMVR
FT VHLVGMIKDNGSALTEAINSLPSHPLIASYGLATTDLKSCVLGVLLGGSLPLIASVLNF
FT EIASLVLAIYQDAKHVELGIDMSKFSTKEAVGKVCTVLKSKGYSMNSVEIGKAKQYADI
FT LKACSPKAKGLAAMDHYKEGLTSVYSMFNATIDFGKNDSI"
XX
SQ Sequence 2982 BP; 978 A; 530 C; 452 G; 1022 T; 0 other;
gq336989 Length: 2982 18-AUG-2009 Type: N Check: 2101 ..
1 agagcaattg tgtcacgaac aaccaagcta caacagaact tacaatattg
51 tcaattacat tactacttcc attttaacat gtctagtgca atgtatgaaa
101 caattatcaa atcgaagtcc tcaatctggg gaacaacatc ttcgggtaaa
151 gcagtagtag atagttattg gattcatgac caatcttccg gaaagaagtt
201 ggtcgaagct caactctatt ctgactccag gagcaagacc agtttctgtt
251 acactggtaa agttggcttt ctcccaacag aagaaaaaga aattataagt
301 gagaatgttt ttgtgcctat ttttgatgac attgatctga atttctcctt
351 ttcaggagat gttgtcgaga ttctggtcag atctaacaca acaaacacaa
401 acggtgttaa acatcaaggc catctcaaag tgttatcctc tcagttgctc
451 agaatgtttg aagagcaaat agcagtgcct gaaattactt caagattcgg
501 tctgaaagaa tctgacatct tccctccaaa taatttcatt gaagctgcaa
551 ataaaggatc attgtcttgt gtcaaagaag ttctttttga tgtcaagtat
601 tcaaacaacc aatccatggg caaagtcagt gttctttctc ccaccagaag
651 tgttcatgaa tggctgtaca cacttaagcc tgtttttaac caatcccaga
701 ccaacaacag gacagtaaac actctggctg taaaatcact ggcaatgtct
751 gcaacttctg acttaatgtc agatactcat tcatttgtca ggctcaataa
801 taacaagccc tttaaaatca gcctttggat gcgcatccct aaaataatga
851 aatcaaacac atacagccgc ttcttcacct tgtctgatga atcttctcct
901 aaagagtatt atataagcat tcaatgtctt ccgaatcaca acaatgttga
951 aacagcattg aatataactt tgatcagcaa acctcttctt gaatcaactc
1001 cttctagcag tgatcataaa attgagatga atttttctga cctaaaagaa
1051 ccttacaatg ttatccatga tatgtcatat cctcaaagaa ttgttcattc
1101 acttcttgaa atccacacag aacttgctca aactatctgt gacagtgttc
1151 agcaagacat aattgtcttc actataaatg agccagatct aaagccaaaa
1201 aagtttgagc tagggaaaga gactttaaat tattcagaag atggttatgg
1251 gagaaaatat ttcctttctc agaccttgaa aagtcttcca agaaactcac
1301 aaacaatgtc ttatttggat agcatccaga tgcccgattg gaaatttgac
1351 tatgctgcag gtgaaataaa aatttctcct aggtcagagg atgttttgaa
1401 agctatttct aaattagatt aaaattaaac ttggttaaac ttgttcctaa
1451 gtaaagtttg tttacatgca tttagatcag atcaaacaaa tctaataaca
1501 gataaaccaa aaacaatcat atgaaataaa taaataaaca taaaatatat
1551 aaaaaataca aaaaatcata aaataatata aaaaaaacca aaaaaagatg
1601 ccttcgggca caatttggtt gcttttaaat aaatgcttta aaatgaatgt
1651 actagtaaat tataaacttt aaatccaatc tactcacgaa tttggccaaa
1701 atttgttctt gttttttgtt tttttgtttt ttatttttgt ttttgttttg
1751 ttttatttgt tttttatttg tttttgtttt ttgttttatt tttatttata
1801 tatatatata tatatatttt ttagttgttt ttattgtttt tattattttt
1851 tgtagctttt ttattgttta tttcacacgc aaaccctttt tagtttatat
1901 attaaaacac acatcaaact tatttcaaat aatttataaa agcacactta
1951 atacactcaa acaataatta attattttta tttttatttt tatttattta
2001 aatgcattta acacaacaca aagcaaacca agcttaaatc tcttttaaat
2051 agagtcattt ttcccaaaat caatagtagc attaaacatg ctgtaaacgg
2101 aggtaagccc ttctttgtag tggtccattg cagcaagtcc tttagctttt
2151 ggactacaag cctttagtat atctgcatat tgttttgcct taccaatttc
2201 aacagagttc atgctatatc ctttgctttt tagaactgtg cacacttttc
2251 caactgcctc tttagtgcta aacttagaca tgtcaattcc aagctcaaca
2301 tgtttagcat cttgataaat agccagaact agtgaagcta tctcaaaatt
2351 cagtacagat gctatcagag gaagacttcc tcctaagaga acacccaaga
2401 cacaagattt caaatctgtg gttgcaagtc catatgaggc aatcagaggg
2451 tgacttggaa ggctgtttat agcttcagtc agggcagatc cattgtcctt
2501 tatcattcca acaagatgaa ctctaaccat tgcatcaagt cttcggaaag
2551 tcatatcatt gactccaact ctttctgaat tgtttctagt tttcttaatt
2601 gtgactgatc caaaagtgaa gtcagcactc ttaatgactc tcattataga
2651 ttgcctattc ttgaggaagg ataggcaaga tgcagtggtc atgttctgaa
2701 tcttttcacg gttgttggta aagaagtcag tgaaattgaa agatccttca
2751 ttttgagttt cctcaaattc taaggaatca gattgagtca aaagcttgac
2801 tatgttctcc ttggtaatct ttgctttgtt catcttgatc tgctgacttt
2851 actaacttta aaacttaaag tgttcaaatt actaaatagt acttgcggtt
2901 aaagtagtat ttggtaaaat ttgtaatttt tcagtttcta gctttggatt
2951 atatgatgtt atattcgtga cacaattgct ct