Sequence of DPV Drosophila melanogaster birnavirus
Drosophila melanogaster birnavirus SW-2009a strain DBV segment B, complete sequence.
ACC No: GQ342963
Dated: 2010-02-05 | Length: 3014 | CRC: 759125457
ID GQ342963; SV 1; linear; genomic RNA; STD; VRL; 3014 BP.
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AC GQ342963;
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DT 09-NOV-2009 (Rel. 102, Created)
DT 05-FEB-2010 (Rel. 103, Last updated, Version 2)
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DE Drosophila melanogaster birnavirus SW-2009a strain DBV segment B, complete
DE sequence.
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KW .
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OS Drosophila melanogaster birnavirus SW-2009a
OC Viruses; dsRNA viruses; Birnaviridae.
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RN [1]
RP 1-3014
RX PUBMED; 20080648.
RA Wu Q., Luo Y., Lu R., Lau N., Lai E.C., Li W.X., Ding S.W.;
RT "Virus discovery by deep sequencing and assembly of virus-derived small
RT silencing RNAs";
RL Proc. Natl. Acad. Sci. U.S.A. 107(4):1606-1611(2010).
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RN [2]
RP 1-3014
RA Wu Q., Ding S.-W.;
RT ;
RL Submitted (29-JUN-2009) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology & Microbiology, UC Riverside, 900 University Ave,
RL Riverside, CA 92521, USA
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CC GenBank Accession Numbers GQ342962-GQ342963 represent the complete
CC genome of Drosophila melanogaster birnavirus SW-2009a.
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FH Key Location/Qualifiers
FH
FT source 1. .3014
FT /organism="Drosophila melanogaster birnavirus SW-2009a"
FT /segment="B"
FT /host="Drosophila melanogaster"
FT /lab_host="S2 cells"
FT /strain="DBV"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="Feb-2009"
FT /db_xref="taxon:663281"
FT CDS 119. .2917
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /note="RDRP"
FT /protein_id="ACU32792.1"
FT /translation="MNETKLVNSTRVLEIAQYIAKRRIHAFKPYYLRQNLEFEASSVLD
FT EQIVRYLQTIRTLQLESGNPKDYEDCTKIHLPDGDPKIPFYRPRFTTGTYDDKLLNAIA
FT FQWLASKETQGNFETAKGYVVQRDRIADPTDMDTTIKRCRQACIDYRLSSGTWQGQLAR
FT LKDMQNIRHGVDGKFLPKSLKELGYDLESFSKILEKTLPINAVDLSQTISLRYLPTLFI
FT EETEVEVKGVKKTSYIDNTPKLKPDSKAGPPFQSKYRKGDMFSSILALADDALLGLSEV
FT IHGRMDRHKYFKDRIYLAMCFLFPKEERYEASKLTTKTRNIASVCGVTHYLMLHAMEPV
FT MEKSKWNCMSSETYENPSLSKFTPYFGNLQKFLDFGLHREKKKVFMPRGAKPTHRDFIY
FT ADNWYIFYRNEDGTTDYYSLDLEKGEANATPDIAQCISYYLLTRGWISDDGIVGFGPTW
FT STFLTQIVPACIVDNISVYYNMQLRFPGQASGNTYTFLINHAVTTKLRQEWLNRGCPRP
FT GSAEFTQCCKKTGVNTKIEFHSENLEQQVKETIANTPNVGFLQGDSTDSVDANGQSWFQ
FT KALPRLKLDLLGYDAVYSHQLGIFIPVLAEERFYPSMMWPRKGGETIKDYIQRNLYNLV
FT RYEVLRIMGGWTIPLADQALHNMATNIRTNIVDKRHKMDTSTFLGQEDLAPDLWGAMED
FT SGLTTELALNPEFSMTHELLTRLNTPKQTSPEHMPVKPKPRHLSKPELMADLQELKKSL
FT TNLTSSHTEKLLAKPEYVRSKLEEVIKTFPSLEAIITIMGKYEDLYSELDEVYNNKMKI
FT EDFMDKLTHWINQAQHEMEEAMRKSIRVVQQAQVQDYENIEAFYEKDPTKLADPLGYKG
FT AQTLVGKHTFPESSSTIPASLTKSQKKNLKKKQRISKLRDIEQASWSRDALGEIRKHEE
FT DL"
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SQ Sequence 3014 BP; 1046 A; 669 C; 648 G; 651 T; 0 other;
gq342963 Length: 3014 05-FEB-2010 Type: N Check: 7745 ..
1 ctttaatact ggtagtgcaa agcaccgctt tagcgagctt ttcaaaatca
51 agagcgaaga cgattcttca gttacagact taatcacaga aagttacttg
101 aaaccacctc aacctaatat gaatgagacc aaacttgtca attcgacaag
151 agtgcttgaa atagcccagt atatcgccaa acgcagaata cacgcattca
201 aaccttacta tctacgccaa aacctagagt ttgaagcgag ctccgtccta
251 gatgagcaga tagtaagata cctccaaacc attcgcacac tacaacttga
301 aagtggtaac cccaaagatt atgaagactg caccaaaata catttacctg
351 atggcgaccc caagattccc ttctatcgac ccagattcac aaccggcacc
401 tatgatgata agctactgaa tgctatagct ttccaatggc tggcaagtaa
451 agaaacacaa gggaactttg agactgccaa agggtatgta gtccagagag
501 acagaatagc tgatcctacg gacatggata ccactatcaa gcgctgcaga
551 caggcctgta tcgattaccg actgagcagc ggcacatggc aaggacaact
601 ggctaggctg aaagacatgc aaaacataag acacggagtt gacggaaagt
651 tcttacccaa atcattaaag gaactgggat acgatcttga atcattcagc
701 aagatactag agaaaacact acccataaac gctgtagacc tctctcagac
751 aatatccttg agatatttac caaccctctt cattgaggag actgaggttg
801 aggtaaaagg agttaagaaa accagttaca tagataacac acccaaactt
851 aaacctgaca gcaaggctgg ccctcccttc caatctaagt ataggaaagg
901 agacatgttc agtagtatac tcgcactagc agatgacgca ctgctaggac
951 ttagtgaagt tatacacggt agaatggata gacataagta tttcaaagac
1001 agaatctatc ttgcgatgtg cttcctgttc cctaaagaag aaagatatga
1051 agcgagtaag ttaaccacga aaacacgcaa tatagcaagc gtgtgtggag
1101 tcacacatta cttaatgctc catgccatgg aacccgtcat ggagaagagt
1151 aaatggaatt gcatgtcctc agaaacctat gaaaacccca gcttatcaaa
1201 gttcacacct tacttcggca atttacagaa attcttagac ttcggcctgc
1251 atcgtgagaa gaagaaggtc tttatgccta gaggggcaaa acccacacat
1301 agagacttta tttatgcaga taattggtac atcttctacc gaaacgagga
1351 cggcactact gactactact cccttgactt ggagaagggt gaagctaatg
1401 cgacccccga catagcccaa tgcattagct actaccttct aacgcgcggt
1451 tggattagtg atgacggtat tgtggggttc ggcccgacct ggagtacatt
1501 tttaacacaa attgtaccag catgtatagt tgataatata tcagtatact
1551 acaacatgca attaagattc ccaggacagg ccagtggcaa cacatacaca
1601 ttcctcatta atcatgctgt gacgaccaag ttaaggcagg agtggctcaa
1651 tagagggtgt cctcggccag gctcagcaga gttcactcaa tgctgcaaga
1701 aaacaggagt caatacaaaa atagaattcc attccgaaaa cttagaacaa
1751 caagtaaaag agacaatcgc taacacaccg aacgtcggct ttctgcaagg
1801 tgacagcacg gacagtgtgg acgcgaatgg acaaagctgg ttccagaaag
1851 cgttaccaag acttaaactc gatttactag ggtatgatgc tgtctacagc
1901 catcagttgg gtatattcat acctgtgctg gctgaagaaa ggttctatcc
1951 atcaatgatg tggccccgaa aaggtggtga aacaataaag gactacatcc
2001 aaaggaacct ttacaacctg gtgcgttatg aagtgctcag aattatggga
2051 ggatggacta tcccgttagc agatcaagca ctgcataaca tggctacaaa
2101 catcaggacc aacatagtag acaaaagaca caagatggat acaagcacat
2151 tcttaggtca agaggacctt gcaccagacc tgtggggcgc catggaggat
2201 tctggcttaa caacagaact ggctctgaac cctgaattct ctatgacaca
2251 cgagctatta actcggctca acacaccgaa gcagaccagc cccgagcata
2301 tgccagtgaa gcccaaacct agacacctat caaaaccaga gttaatggca
2351 gacttgcaag agttgaaaaa gagtctgacc aatctaacat cctctcatac
2401 agaaaaatta cttgctaagc cagagtatgt taggagcaaa ttggaggaag
2451 tcataaaaac attcccatca ttagaagcaa taataacaat tatgggtaaa
2501 tatgaagact tatactcaga actcgatgaa gtctacaaca acaaaatgaa
2551 aattgaagac ttcatggaca agctcacaca ctggataaac caagcccaac
2601 atgaaatgga agaggctatg aggaagtcta taagggttgt ccaacaggca
2651 caggtgcaag actatgagaa catagaggcc ttttacgaga aggaccctac
2701 aaaattagcc gacccactag gatacaaagg agctcaaaca ctagtgggca
2751 agcacacttt ccctgaaagc tcctcaacca taccagctag cttaacaaaa
2801 agccagaaaa agaatctcaa gaaaaagcag aggattagca agcttcgcga
2851 tattgagcaa gccagctgga gtagagatgc gttgggagaa ataaggaagc
2901 atgaggaaga tctgtaactg atttagatga gctggacgat attgcagacc
2951 cgggggaata atacggggat cgtccagaac accagacaaa ttagtaattg
3001 ttagcgtgag agac