Sequence of DPV Sweet potato mild mottle virus
Sweet potato mild mottle virus isolate 130 polyprotein gene, partial cds.
ACC No: GQ353374
Dated: 2010-08-02 | Length: 3633 | CRC: -953606289
ID GQ353374; SV 1; linear; genomic RNA; STD; VRL; 3633 BP.
XX
AC GQ353374;
XX
DT 02-AUG-2010 (Rel. 105, Created)
DT 02-AUG-2010 (Rel. 105, Last updated, Version 1)
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DE Sweet potato mild mottle virus isolate 130 polyprotein gene, partial cds.
XX
KW .
XX
OS Sweet potato mild mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
XX
RN [1]
RP 1-3633
RX PUBMED; 20657820.
RA Giner A., Lakatos L., Garcia-Chapa M., Lopez-Moya J.J., Burgyan J.;
RT "Viral protein inhibits RISC activity by argonaute binding through
RT conserved WG/GW motifs";
RL PLoS Pathog. 6(7):e1000996-e1000996(2010).
XX
RN [2]
RP 1-3633
RA Giner A., Garcia-Chapa M., Tairo F., Lopez-Moya J.J.;
RT ;
RL Submitted (03-JUL-2009) to the EMBL/GenBank/DDBJ databases.
RL Department of Plant Molecular Genetics, Centre for Research in Agricultural
RL Genomics CRAG, CSIC-IRTA-UAB, Jordi Girona, 18-26, Barcelona 08034, Spain
XX
FH Key Location/Qualifiers
FH
FT source 1. .3633
FT /organism="Sweet potato mild mottle virus"
FT /isolate="130"
FT /mol_type="genomic RNA"
FT /country="Tanzania"
FT /isolation_source="Ipomea sp."
FT /db_xref="taxon:41459"
FT CDS 1. .>3633
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="ADI24117.1"
FT /translation="MGKSKLTYKQCIAKWGKAALEAQNNGSKRSVTVGTHQIAANIFAF
FT YDAKDYHLFAMGKRGGLTPAAEQLRIAIERGTIYKVQYDCHFCPDCDAIVDSDEGWYCE
FT DCGSQFNKRDDNVLDNKNDVARALGGWTEYEDATWASFEAAKADMLEVAPTVGQLEKEI
FT RAIEKSAGKRLTAYEEEMLEELAYKLDVAKMNEEKQETVFEETVFSISNDEFPALEGPQ
FT AEAVNETIEKPNEENAIEIASEVEKTVESESTNGITDEQINDATDAHVVVTPVVASSAT
FT NFGTATNKEKLVEKPKAVMWVTKTKIPAVVPAMPSKSAVWVAKPRLAPALPIVESVAKP
FT TVQACGSVINIGAMVCPITVAAIESHSHQNEKLNESLNAQVDDTTKEEAPVVKYNITFG
FT SFNYEVSAKGEQVQAAVKLDEMIEGPDIEPILICQTGSSHKHETKKAAKGLFVQDRFSV
FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGSYKNAALRLLKATKVQVFYDGIKDIFEC
FT PYCHVSSNELEGLNGDNCEKCKDLFYKHIEDPRKVEEEYLMVPLVPIDQHVHEEHSIIS
FT KAKWEAHESICEGEVNVIKVFDGKPTASKKKFKTKQASNVANIPLDDFMQELVEICLER
FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFCHENKLCLCGRIDREKKI
FT RSFEVRPGWSGVTLHRNQVAECDWSKFVLIDDICVVQGRNLITNKIENALEKKGASKLK
FT QIQFYASSVVPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC
FT CFRVIKSKRVDIVNALNKAKQRGERDEFIYDELIKLFDLQAPPPYKIAAITNNGDMLRT
FT LGLGGDQYSGRLSLIMQHLQGLHASISMLHQSLAGAQNDQQIDRQSLHNQVRILHQRNE
FT EHMPILKKAVDEIQLLNATDQVANARELYLDTRATSTGDFDILRKYQSICEFFPNIMSR
FT ANKVGMAVIKSGTSLSKAFALMNSAKSMDAIHTLIGEDVIEHVDGACLLKNDKTFFSIG
FT CKQGVDGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHEATVWEFNEGYCYANQFALMV
FT GFINEDEMEFYKNQMNQVVLNLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHVS
FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVG"
FT mat_peptide 1. .2274
FT /product="P1 protein"
FT mat_peptide 2275. .>3633
FT /product="HC-Pro protein"
XX
SQ Sequence 3633 BP; 1157 A; 648 C; 899 G; 929 T; 0 other;
gq353374 Length: 3633 02-AUG-2010 Type: N Check: 2719 ..
1 atggggaaat ccaaactcac ttacaaacaa tgcattgcta agtggggaaa
51 agccgcactt gaagcgcaaa acaatggatc aaaaaggagt gtcactgttg
101 gaactcacca gatagcggcc aatatttttg cgttttatga cgcaaaagat
151 taccatctgt ttgccatggg caaaagaggt ggactgactc cagcagctga
201 gcagttgaga attgctatcg agcggggaac tatttacaag gtgcagtatg
251 actgccactt ctgtcctgat tgcgacgcga ttgtcgactc tgatgaggga
301 tggtattgtg aggattgcgg ttcgcaattc aacaagcgcg acgataatgt
351 acttgataac aaaaatgatg tcgcacgcgc tcttggtggg tggactgaat
401 atgaagatgc cacttgggcg tcatttgagg ctgctaaggc tgatatgctt
451 gaagtagcac caaccgtggg acaacttgag aaagagatca gagccataga
501 aaagtcagct ggcaaaagac tcactgctta tgaagaagaa atgctggagg
551 agttggcata caaacttgac gtggccaaga tgaacgagga aaaacaggag
601 acggtttttg aggaaactgt tttctcaatt tccaatgacg aatttccggc
651 gcttgagggg ccacaagctg aagcagtcaa cgaaaccatt gagaaaccta
701 atgaggaaaa cgcgattgaa atcgcgagtg aggttgaaaa aactgtggag
751 tctgaatcca ctaatgggat tactgatgag caaattaatg atgctactga
801 tgcgcatgta gttgtgacgc ctgtcgtggc ttcaagtgca acaaacttcg
851 ggacggcaac caacaaggag aagttggttg aaaaaccaaa agcagttatg
901 tgggttacaa agacaaaaat tcctgctgta gttcctgcta tgccatctaa
951 gtcggctgtc tgggttgcca agcccaggct agcacctgca cttcctattg
1001 ttgaatcagt tgctaagcca acagtgcaag cttgcggtag tgtgattaac
1051 ataggcgcta tggtgtgtcc catcacggtg gcagcaattg aatcacacag
1101 ccatcaaaat gagaagctca atgaatcctt aaacgcacaa gttgatgata
1151 caacgaaaga agaggcacca gtggtcaaat acaatataac ttttggttca
1201 ttcaattatg aggtgagcgc gaaaggggag caagtgcaag ctgccgtcaa
1251 acttgatgag atgatagaag gacctgatat tgaacctatt ctgatttgcc
1301 aaacaggaag ttcccacaaa catgaaacca agaaagcggc aaaaggtctt
1351 tttgtccagg atagattttc agtgattggg aataaggtct tgtgcaagtc
1401 ctttcctgcc ttcaaaaatt tcatgaatga gacaaggttg ggagggattt
1451 atagaacaag aaaaggaagt tacaaaaacg ctgcattgcg tttattgaag
1501 gctactaaag ttcaggtgtt ttatgatggg ataaaggaca tttttgaatg
1551 tccgtattgc cacgtgagca gtaatgagct agaaggcctt aatggagata
1601 attgcgaaaa atgcaaggat ctattttaca aacacatcga agacccgaga
1651 aaggttgagg aggaatatct tatggttccc ctcgtgccta tcgatcagca
1701 tgttcatgaa gaacatagca tcatcagtaa ggctaaatgg gaagcgcacg
1751 aatccatttg tgaaggagag gtgaatgtta tcaaggtttt tgatggcaaa
1801 ccaactgcaa gcaagaagaa attcaaaact aagcaagctt caaatgttgc
1851 aaatatacca ctcgatgatt ttatgcaaga gctagttgaa atttgtcttg
1901 agagaaacac ccctattgaa attattgggg gcgtaaaatc tttcaatgtg
1951 gttaagttaa ggcacactac gagagatatt agcaagtctg gtgaggatga
2001 catgtatcca actgaaaggg agtggttctg ccacgagaat aagctgtgtt
2051 tgtgtggtag gattgatcgt gagaagaaaa tcagaagttt cgaggtgcgc
2101 ccaggttgga gtggagtgac cttacatagg aatcaagtgg cggaatgtga
2151 ttggagcaag tttgttctca ttgatgacat atgcgtggtg caaggtagaa
2201 acttgattac gaacaagatt gagaacgcac ttgaaaagaa aggggctagt
2251 aaacttaaac agatacaatt ctatgcaagt tctgttgtac ccaatttcaa
2301 ggacgaattt gacagagcca gccggctaaa agccgatcat gagccggatg
2351 agtcgtctaa caacgaactt attggtaggt tggccaagct tgttgcagca
2401 gtcattccaa aaggccacct atactgtaaa acatgctgtt ttagggttat
2451 caagagcaaa cgtgtagaca tagttaatgc attgaataaa gctaagcagc
2501 gtggcgagcg agatgagttc atttatgatg agcttattaa actttttgat
2551 ctacaagcac caccaccata taagattgca gcaataacca acaatggtga
2601 tatgttgcga acattaggat tgggtggaga ccaatatagt gggcgactga
2651 gcctcataat gcaacatttg caaggattgc atgcgtcgat atcaatgctt
2701 caccaatcgc ttgcaggagc ccaaaatgac cagcaaattg acaggcaatc
2751 gcttcataac caagtacgga tcttacacca gagaaatgaa gagcatatgc
2801 ctattctaaa gaaggcggtt gatgaaattc agttattaaa tgcaacagat
2851 caggtcgcta acgctcggga attgtacttg gacactagag caactagtac
2901 tggagatttt gatattttac ggaaatatca gagtatatgt gagttctttc
2951 caaatatcat gagccgagct aataaagtag ggatggcagt cattaaatct
3001 ggaacatcat tgagcaaagc ttttgccctt atgaacagtg ctaagtcgat
3051 ggatgctatt catacgctta taggggaaga cgtcatagaa catgttgatg
3101 gagcttgctt gctaaagaat gacaagacat ttttctcaat tggttgcaag
3151 caaggtgttg atggaagcaa gatgtatggc ccactttgtc cgaccaaaca
3201 gcatgtaaga atccaccgag ttgaatctaa catgcaaatt cctttaccaa
3251 cattccacga agcaacagtc tgggaattta atgaaggtta ttgctacgct
3301 aatcaattcg ctctgatggt tggttttatc aatgaggatg aaatggaatt
3351 ttataagaat caaatgaacc aagttgtgtt gaacttagga gcttggccga
3401 cctttgagca atatttaatt gagctgcgag caatctcact tgattatcct
3451 aaagttaggg ggtgtccagc agcaatccat ttagtttccc atgttagcaa
3501 gcttatccat gttttgggac aatttggaac aataaatcaa gggtggcatg
3551 cgctcgaagt ggcaactgta ggtgaactcg tggacttgtg ccataagaaa
3601 gttgaaggtg agatgttaac ctataaggtt ggt