Sequence of DPV Arabis mosaic virus
Arabis mosaic virus isolate ba segment RNA1-I, complete sequence.
ACC No: GQ369526
Dated: 2012-08-01 | Length: 7384 | CRC: 2096823015
ID GQ369526; SV 1; linear; genomic RNA; STD; VRL; 7384 BP.
XX
AC GQ369526;
XX
DT 01-AUG-2012 (Rel. 113, Created)
DT 01-AUG-2012 (Rel. 113, Last updated, Version 1)
XX
DE Arabis mosaic virus isolate ba segment RNA1-I, complete sequence.
XX
KW .
XX
OS Arabis mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Secoviridae; Comovirinae; Nepovirus; Subgroup A.
XX
RN [1]
RP 1-7384
RA Marmonier A., Vigne E., Komar V., Demangeat G., Besse S., Gugerli P.,
RA Lemaire O.;
RT "Comparisons of genomic and pathological features among barley and
RT grapevine infecting-isolates of Arabis mosaic virus";
RL Unpublished.
XX
RN [2]
RP 1-7384
RA Marmonier A., Vigne E., Lemaire O.;
RT ;
RL Submitted (09-JUL-2009) to the INSDC.
RL UMR 1131, INRA, 28 rue de Herrlisheim, Colmar, 68 68000, France
XX
CC GenBank Accession Numbers GQ369526-GQ369530 represent sequences
CC from the 5 segments of Arabis mosaic virus isolate ba.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7384
FT /organism="Arabis mosaic virus"
FT /segment="RNA1-I"
FT /host="winter barley cultivar Express"
FT /isolate="ba"
FT /mol_type="genomic RNA"
FT /country="Switzerland"
FT /collection_date="1991"
FT /note="identical sequence found in winter barley cultivar
FT Mannitou"
FT /db_xref="taxon:12271"
FT CDS 229. .7086
FT /codon_start=1
FT /product="polyprotein P1-I"
FT /protein_id="ADJ39329.1"
FT /translation="MWQISEGSQCCCTGKSWSNAEAKEARYVCDCLYNCRLVKVEVAPQ
FT PPKSRIAPAQQKKERIAPLQNSNGRMAPTTPKFKRASVPDAPLVKQRCDVVVRVGPPAN
FT LELVYPALVQEEVATPPTEKVLQPTTKADVRVPVCCAPKWMVAIPKPPVKTAPRVEQTQ
FT FPKGAVCYNGTNFLDAAGKVVLSEGAKRILKGIRVAKQQRQRAARRSAACKKVRKARAL
FT ALYKRLSEERTFQELPGGFAGEIPAGFFSYGKTVASPIATPKKVVTKRKRVSKPSTIAV
FT PVQDFSCIDAFDWGEKSFPNEEAIEDDWVLVEKPVLKRQAAHSVQGRATEALTRFAASS
FT GFTTKAHQKVEELASSGEAGHLLAGEFAELCLRSLVYNDAPILSASIEVLACEQDFKDA
FT IELFNIELAEIPTDSTTCGRFNEWASSVKTMAKGVGSLVGDFARGAGTLTLITFDKAIE
FT YLQEKALTLCQKVFNATMVPYLSHLAEASDIIKKIWKKLSEWMESLKGKAGLALEVLAH
FT HAIFALGAIVVGGVVVLVEKVLVACKVIPTCGIVLGAFLTLFFASLGLTALECTADEIF
FT KMHQCCKGAIYSMYSVKEPVCEGEGDSTTKGVLQGLDNAISALTRVGQSMISFKLGSFS
FT YYAKIAQGFDQLARGKRAIGELTSWLIDLVGSVYSKVSGQESTFFDELSTIVCLDVRSW
FT LLKSKRVRLQVETMAIGDRITLDTISKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVS
FT KLEEVHQRTACAGINEGMRQFPFWVYIFGASQSGKTTIANSVIIPSLLEEMNLPKTSVY
FT SRPKTGGFWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMSM
FT DSPLVVTTANTVKPPTNAGITDEASFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLH
FT NKCAYVDSGGVPQGPAVNTPMEEGWVSPSEAVATLKNLLGEHVLAEEEKLLDYRERIGN
FT DHPIYNAAQEFIGNMHYPGQWLTTEQKNTYGINEEGFSFLAVDGKMYKYNVLGKLNPCE
FT TTPPHPNVIPWLEEKTLTVVHWDVHKHIATGPRNALVSCFLQGLVQDQSRVQSVELMGK
FT DSSPEQQAFFKRLSLSERIYLRLCQIRIDAVKKEQLGGPSRGTLDVLRDCMAKSKAKLC
FT ENYSLLLTLVAVLVLIATAYSLISTLVGLAGCTSFAGGIVAMKQVSNASIPCSEPRLEE
FT RYSARNRFVSRISRARGDGPAKGQGEHEELVTELYYYFDGVKRLISCCWFKGRSLLMTR
FT HQALAIPIGNEVQVIYADGTDRKLVWPGKQEDGSCKGYIEFPENELVVFEHARLLTMPV
FT KYEKYFVDDPDRQISPNVAVKCCVARLEEGLPQFHFWNKYASARSDVHTVVDEGGSAVY
FT QNKIRRHIIYAHEAKRNDCGAIAVAEIQRVPKVIAMLVSGAGNVSYSSVIPNYSSSFVR
FT GDVPYVPEDGIKTNGYRKVGYLMRKDAPHVPSKTAFMKVPDEICFPYPNPKQPAILSAE
FT DERLKGTVHEGYTPIRDGMKKFAEPMHLLDEKLLDEVAGDMVHTWFDVGEFLEDVPLNI
FT AINGDVDEEYFDPMAMDTSEGYPEVLQRKAGEKGKARFFVGEPGAREFVPGCGPERAYL
FT SLEEECKTRVPSLISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLL
FT MKKRSHLPCQVGINPYSREWTDLYHRLAEMSDVGYNCDYKGFDGLITEQILAVVATMIN
FT AGYQNPVANQQRSNLLLAISGRLSICGNQVYETEAGIPSGCALTVVINSIFNELLMRYC
FT FKKIVPPVYRECFDRCVVLITYGDDNVFTVSQSIMESFTGDALKAEMANLGVTITDGKD
FT KSLATIPARPLLELEFLKRGFKRGNGGMIYAPLEKLSIMSSLVYIRSDGSDMLQKLVDN
FT VNSALVELFLHQDREYSESVRNFYLEKLPPGSYKELTTWYQAQTFHECQLSGESNWKPQ
FT GLIEISHGAGFASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSLSSLLPGDVNA
FT TKLELKCGDGIGRLPSKASVLAQRKPGIVMRLCKQALDEKKTLVIRDERPYIGGWAMAC
FT ICGESFGFSIRDTLALYANLLGPERKNGLAGYFSNFESPVHVKKVHAITNGEEGAAMLK
FT EVFTFCEPKIYAATSCDTRREMLTHPPESFPNIVLIGGVSFPKEGGEPGALYSHTDITM
FT SKKTKGVYVSEAILKCCLRCPGVSTKTVLQTSTVGSNLSKAHLKSLRQLQTHQCVRR"
XX
SQ Sequence 7384 BP; 1979 A; 1472 C; 1850 G; 2083 T; 0 other;
gq369526 Length: 7384 01-AUG-2012 Type: N Check: 2133 ..
1 atgaaaaatt tttgtgagtt ctatattaaa ggcgatcccc tttaatctca
51 taagcaagag tttaagaaac tcaaattttc atagtcaatc cgttaagagc
101 ggaaacaaag ccaaaccgtt aagagcggta ctaaaagaag agtttaagaa
151 actcattgct ttatttttca tttcatttac gctgtatttg tttagttttt
201 gttttgttta attaaagctt tcgccacgat gtggcaaatt tctgaaggct
251 cccagtgctg ttgcactggg aagtcctggt ctaatgccga ggccaaagag
301 gctcggtatg tctgcgattg tttatacaat tgcaggcttg tcaaagttga
351 ggtagcgcct cagcctccga agagtaggat agcgcctgct caacaaaaga
401 aggagaggat agcgcctctt caaaactcga atggtaggat ggcgcctacc
451 acccccaaat tcaaaagggc ttccgtgccc gacgcacctt tggttaaaca
501 gaggtgtgat gttgttgtga gggttggccc gccggctaac ctagagttgg
551 tataccctgc cttagtgcag gaagaggtgg caaccccacc tactgaaaag
601 gtcctgcagc ctaccacaaa ggctgatgtt agggtgccag tttgctgtgc
651 gcctaaatgg atggtggcta tccccaagcc accggttaaa actgctccca
701 gagtggagca aacacagttc cctaagggag ctgtgtgtta taacggcacc
751 aactttttgg atgccgcggg gaaagtcgtc ctatctgagg gcgcaaagag
801 gattctcaag ggaatccgcg ttgctaagca gcaacgtcaa agggctgcac
851 gtagatctgc tgcgtgcaag aaagttcgca aggccagggc tctggctttg
901 tataagcgct tgtctgaaga gcgcaccttt caggagctgc ctggaggatt
951 tgcgggtgaa attcctgctg gtttctttag ctacggtaaa accgtagctt
1001 ctcccattgc cacccctaaa aaggtggtta ccaaaagaaa gagggtgtca
1051 aagccctcta ctattgctgt tccagtgcag gacttttcct gcattgatgc
1101 cttcgattgg ggggagaaat ccttcccaaa tgaggaagcc atcgaggacg
1151 attgggtcct tgtggaaaaa cctgttttga aaaggcaggc tgcacactct
1201 gtgcagggga gggcgactga agcccttaca agatttgccg cttcaagcgg
1251 ctttacaaca aaagcccacc aaaaggtgga agagctagcc tcatctggag
1301 aggctggcca cttgttagca ggagagttcg cagagctctg tctgagatcc
1351 ctggtgtata atgatgcacc cattttatct gcctctattg aagtgcttgc
1401 ttgtgagcaa gattttaaag atgccataga gctcttcaat attgaactgg
1451 ctgaaatacc aactgattcc accacgtgtg gacggtttaa tgaatgggct
1501 tcttctgtca agactatggc aaaaggagtt ggttccttag ttggtgattt
1551 tgcccgagga gctgggaccc taacgctcat aacctttgat aaggctattg
1601 agtatttaca ggagaaggcg ctgacacttt gccaaaaagt gttcaatgct
1651 accatggtcc cttatttgag tcacctcgct gaagcttctg atattataaa
1701 gaaaatttgg aagaagctta gtgagtggat ggaaagctta aagggcaagg
1751 ctggattggc tttggaagtg ctcgcacacc atgccatctt tgctctcgga
1801 gctattgtcg ttggaggagt tgtagtcctc gttgaaaaag tacttgtagc
1851 ttgtaaagtt attcccactt gtggaattgt gctaggtgct tttttaactc
1901 ttttctttgc cagtctggga ttgacggctc tagagtgcac tgctgatgaa
1951 atttttaaaa tgcaccaatg ctgcaaaggt gctatctaca gcatgtactc
2001 agttaaagag cctgtgtgtg aaggcgaagg agactccacg acaaaaggag
2051 ttttacaggg gctagataat gctatatctg ccctgactag agttgggcaa
2101 agtatgatta gcttcaaatt gggaagcttc tcgtactatg ccaagattgc
2151 ccaaggattt gatcaacttg ctcgtggaaa gagagcaata ggcgaactta
2201 ctagctggct cattgatctt gttggaagtg tttactctaa agtctctgga
2251 caggagagca ctttctttga tgagttatct actatagttt gtcttgacgt
2301 cagatcgtgg ctgttgaaaa gcaagcgcgt gagactgcaa gttgaaacta
2351 tggccattgg agatagaata acgcttgata ctatttccaa attgcttgaa
2401 gaaggccata aaatccttgt cactgctgct ggtgtgccta ggaaaacctc
2451 cgctgatttt acaatgtgca ttaaagagga ggtttccaag ctggaagagg
2501 tccaccaaag aactgcctgc gccggcataa atgaaggtat gcgccagttt
2551 ccattctggg tatacatttt tggcgcctca cagtctggga agactaccat
2601 tgctaattct gtcattattc cttctttatt agaagagatg aatcttccca
2651 agacttctgt gtactccaga cccaagacag ggggtttctg gagcggatat
2701 gctaggcagg cgtgtgttaa agtcgatgat ttctatgcta ttgagcaaac
2751 gcccagtcta gcttcttcca tgatagatgt ggtgaattct gaaccatacc
2801 cactggatat ggcctatctg catgaaaaag gcatgtccat ggattcacca
2851 cttgtcgtga cgactgcaaa tactgtgaag ccccctacta atgctggtat
2901 tactgatgaa gcttctttct ttaatcgtcg cgctgctgtc atagaagtga
2951 gaagaaagga caatacccac tttacacccc gtgcatatga caattgcatt
3001 gaagtgaggt ttttgcacaa caagtgtgct tatgtcgatt ctgggggtgt
3051 cccccaaggg cctgccgtta acacgcccat ggaagaagga tgggtttctc
3101 ccagtgaagc tgttgctaca ctgaaaaatc ttttgggaga acacgtcctt
3151 gctgaagaag aaaagctgct ggactatcgt gagaggattg gtaatgacca
3201 tcctatttac aacgcagctc aggaattcat aggtaacatg cactatcctg
3251 gacagtggtt aaccactgaa caaaagaata cctatggaat caatgaagaa
3301 gggttctctt tccttgctgt tgacggaaag atgtacaagt acaatgtact
3351 tggaaagctg aacccctgtg agaccactcc accacatccc aatgtgattc
3401 cttggctgga ggaaaaaaca ttgactgtag tgcattggga tgtgcacaaa
3451 cacatagcta ctggtccgcg taatgcccta gtgtcctgct tcttgcaagg
3501 cctagtccaa gaccagagcc gtgtccagag tgttgagcta atgggaaaag
3551 atagctcacc agaacagcaa gcgtttttca aaagactgag cctttctgag
3601 agaatttatc tcagattgtg ccagattagg atcgatgctg ttaaaaagga
3651 acaattgggt gggccatcta gaggaactct agatgtcttg agagactgca
3701 tggccaaaag caaagctaag ttgtgtgaga actattctct ccttcttact
3751 ttggttgcag ttttagtgct gattgctaca gcctactctt tgatttctac
3801 tctggttgga ctagccgggt gtacaagctt tgctggagga atagttgcta
3851 tgaagcaagt ttcaaatgct tctattccat gttcagaacc ccggttagag
3901 gaaagatact cagctaggaa ccgttttgtg tcgcggattt ctagagctag
3951 aggtgatggc ccagctaagg gccagggaga acacgaggaa ttggtcactg
4001 aactctatta ttattttgat ggagtgaaga gattaatttc ctgttgctgg
4051 tttaaagggc gctccctact gatgacgaga caccaggcgt tggccattcc
4101 tatcggaaat gaagtgcagg ttatctatgc tgacggcacc gataggaaac
4151 ttgtatggcc aggaaaacaa gaagacggtt cttgcaaggg atacatcgaa
4201 tttcctgaaa atgaacttgt cgtatttgag catgctaggc ttttgactat
4251 gcctgtcaaa tatgaaaagt attttgtgga tgatcccgac cgtcaaatct
4301 ctcccaatgt tgctgttaaa tgctgcgtag cacgacttga ggaggggctt
4351 ccccaattcc atttttggaa taagtatgct tctgcaagga gtgacgtgca
4401 tactgttgtt gatgaagggg ggagtgcagt gtatcagaac aagatcagga
4451 ggcatattat atatgcccat gaggccaaac gaaatgactg cggggctatt
4501 gctgtagctg aaatacagcg ggttcccaag gttattgcta tgcttgtgtc
4551 tggtgccgga aatgtatcct attcttctgt gattccaaat tatagttcct
4601 cctttgttag gggggacgtg ccttatgtgc cagaagatgg gataaagact
4651 aatgggtata ggaaagtagg gtatctgatg cgaaaagatg ccccacatgt
4701 tccaagcaaa acggcattta tgaaagtgcc tgatgaaatt tgctttccat
4751 accctaatcc aaagcagcca gccatcctga gcgcagaaga tgaaagatta
4801 aagggtactg tccatgaagg atataccccg attcgggatg gtatgaaaaa
4851 atttgctgaa ccaatgcacc tgctggatga gaaattgtta gatgaagtag
4901 caggtgatat ggttcacaca tggtttgacg taggggaatt tcttgaagat
4951 gtccctctaa atattgccat taatggtgat gtggatgagg agtatttcga
5001 ccctatggcc atggacacat ctgaaggata tccagaagtc cttcagagga
5051 aagcagggga gaaagggaaa gcccgtttct ttgttgggga acctggtgca
5101 cgagagtttg tgcctgggtg tggacctgaa agagcttatt tgagtctaga
5151 agaggaatgc aaaacgcgtg tcccttctct tataagtatt gaaaccccaa
5201 aagatgagag gcttaaaagg tctaaaattg aaactccagg tacgaggttg
5251 ttttccgtgc tgcctttggc atacaatctt ttgcttagag tcaaattttt
5301 atctttttcc cgcctgttaa tgaagaagag aagccacttg ccttgtcagg
5351 taggcatcaa cccttatagt cgcgaatgga ctgatttgta ccaccgtttg
5401 gcagaaatgt cggatgttgg ttacaattgt gactacaagg ggtttgatgg
5451 tctaattact gagcaaattt tggccgttgt tgcgacaatg ataaatgcgg
5501 ggtatcaaaa ccctgttgct aatcaacaac gttccaatct tttgctagct
5551 ataagtggcc ggctctctat ttgtggaaac caggtttatg aaacagaagc
5601 cggtattcct tctggatgtg cactaacagt ggtcataaat tctatattta
5651 atgaactgtt aatgcgctac tgtttcaaga agattgtccc tcctgtctac
5701 cgggaatgct ttgatagatg cgtcgttttg atcacctatg gtgatgataa
5751 tgttttcacc gtatcgcaat caatcatgga aagcttcact ggagatgctc
5801 ttaaagccga gatggctaat ctaggagtga caattactga tggcaaagat
5851 aagagtcttg ccacgattcc agcacgccct ctgctggagt tggaattttt
5901 gaaaagaggg ttcaagagag ggaatggagg catgatttat gctcccctgg
5951 aaaaactgtc catcatgagt tcacttgtgt atatacgtag tgatgggtca
6001 gatatgttgc agaaattagt cgacaatgta aatagtgctt tagtcgagtt
6051 gtttttgcac caggacaggg agtattcaga gagtgtccga aatttctacc
6101 ttgagaagct tcccccaggg tcttataaag aattgacaac atggtatcag
6151 gctcagacct tccatgaatg tcaacttagt ggggagagca actggaaacc
6201 ccagggatta attgaaataa gccatggtgc tggttttgcc agtttcgtcc
6251 aacaggatgg aactgagttg gagcgccatg acatttgtcc tgggttggct
6301 atatctggag ctaggtatat tgccaagaaa gaagagatac tgatgtctct
6351 tagctccctt ttgccaggtg atgtcaacgc tactaagctt gaactcaaat
6401 gtggagatgg tataggccgt cttccctcta aagctagtgt gttggcacaa
6451 cggaagcctg gtatcgtgat gaggttatgc aagcaggccc tcgatgagaa
6501 aaagactctt gtcattcgtg atgagagacc ttatattgga gggtgggcta
6551 tggcttgcat ttgtggagag agttttggct tttccattag ggataccctg
6601 gcactttatg ccaacttgtt aggtcccgag cggaaaaatg gattggctgg
6651 atatttttca aactttgaaa gtccagtcca tgtgaagaaa gttcacgcca
6701 ttactaatgg agaagaagga gctgctatgc tgaaggaggt gttcactttt
6751 tgtgagccca agatatatgc agctacttct tgtgacacga ggagggaaat
6801 gttgactcat ccacctgagt cctttcctaa tattgtttta attgggggag
6851 tcagtttccc aaaagaaggt ggagaacccg gagctttgta ctcccacact
6901 gatatcacta tgtccaaaaa gactaagggc gtttatgtca gtgaggccat
6951 attaaagtgt tgtctgaggt gtcctggtgt tagtaccaag acagtccttc
7001 agacttccac tgttgggagt aacttatcta aagctcattt gaaaagcctg
7051 cgccaattac aaacgcatca gtgtgtgcgt aggtagctct tcatctaacc
7101 aggcaagccg gcagactacg tgtgctgcta ccatggaact acatggtcta
7151 gaatggtact gggataacca tcaataaata acccagtttt cgcgctgctc
7201 atgctcttgt gggcgcgtca tatttagagc aacttgtatt atatttatat
7251 ttagcttgtt tactgctttt gtgtgtttaa tttcatgctt atagtggcga
7301 cagtgtgttg tttgtccttt ggacacactt gccttgttgg acgcaaaaag
7351 attttatttt ctttttactg cttttgtaaa tttc