Sequence of DPV Arabis mosaic virus
Arabis mosaic virus isolate ba segment RNA1-II, complete sequence.
ACC No: GQ369527
Dated: 2012-08-01 | Length: 7385 | CRC: 1594511653
ID GQ369527; SV 1; linear; genomic RNA; STD; VRL; 7385 BP.
XX
AC GQ369527;
XX
DT 01-AUG-2012 (Rel. 113, Created)
DT 01-AUG-2012 (Rel. 113, Last updated, Version 1)
XX
DE Arabis mosaic virus isolate ba segment RNA1-II, complete sequence.
XX
KW .
XX
OS Arabis mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Secoviridae; Comovirinae; Nepovirus; Subgroup A.
XX
RN [1]
RP 1-7385
RA Marmonier A., Vigne E., Komar V., Demangeat G., Besse S., Gugerli P.,
RA Lemaire O.;
RT "Comparisons of genomic and pathological features among barley and
RT grapevine infecting-isolates of Arabis mosaic virus";
RL Unpublished.
XX
RN [2]
RP 1-7385
RA Marmonier A., Vigne E., Lemaire O.;
RT ;
RL Submitted (09-JUL-2009) to the INSDC.
RL UMR 1131, INRA, 28 rue de Herrlisheim, Colmar, 68 68000, France
XX
CC GenBank Accession Numbers GQ369526-GQ369530 represent sequences
CC from the 5 segments of Arabis mosaic virus isolate ba.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7385
FT /organism="Arabis mosaic virus"
FT /segment="RNA1-II"
FT /host="winter barley cultivar Express"
FT /isolate="ba"
FT /mol_type="genomic RNA"
FT /country="Switzerland"
FT /collection_date="1991"
FT /note="identical sequence found in winter barley cultivar
FT Mannitou"
FT /db_xref="taxon:12271"
FT CDS 230. .7087
FT /codon_start=1
FT /product="polyprotein P1-II"
FT /protein_id="ADJ39330.1"
FT /translation="MWQISEGSQCCCTGKSWSNAEAKEARYVCDCLYNCRLVKVEVAPQ
FT PPKSRIAPAQQKKERIAPLQNSNGRMAPTTPKSKRASVPDAPLVKQRCDVVVRVGPPAN
FT LELVYPALVQEEVATPPTEKVLQPTTKADVRVPVCCAPKWMVAIPKPPVKTAPRVEQTQ
FT FPKGAVCYNGTNFLDAAGKVVLSEGAKRILKGIRVAKQQRQRAARRSAACKKVRKARAL
FT ALYKRLSEERTFQELPGGFAGEIPAGFFSYGKTVASPIATPKKVVSKRKRVSKPSTIAV
FT PVQDFSCIDAFDWGEKSFPNEEAIEDDWVLVEKPVLKRQAAHSVQGRATEALTRFAASS
FT GFTTKAHQKVEELAASGAAGHLIAGEFAELCLRSLVYNDAPTLSASIEELACEQDFKDA
FT IELFNIELAELPTDSTTCGRFNDWASAAKTMAKGTGSLVGDLARLAGAGLVITFDKAIE
FT YLQEKALTLCQKVFNATMAPYVSHLSEASDIIKKIWKKLSEWMESLKGKAGLALEVLAH
FT HAIFALGAIVVGGVVVLVEKVLVATKVIPTCGIVLGAFLTLFFASLGLTALECTADEIF
FT KMHQCCKGAIYSMYSVKEPVCEGEGDSTTKGVLQGLDNAISALTRVGQSMISFKLGSFS
FT YYAKIAQGFDQLARGKRAIGELTSWLIDLVGSVYSKVSGQESTFFDELSTIVCLDVRSW
FT LLKSKRVRLQVETMAIGDRITLDTISKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVS
FT KLEEVHQRTACAGINEGMRQFPFWVYIFGASQSGKTTIANSVIIPSLLEEMNLPKTSVY
FT SRPKTGGFWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEPYPLDMAYLHEKGMSM
FT DSPLVVTTANTVKPPTNAGITDEASFFNRRAAVIEVRRKDNTHFTPRAYDNCIEVRFLH
FT NKCAYVNSEGVPQGPAVNTPMEEGWVSPSEAVATLKNLLGEHVLAEEEKLLDYRERIGN
FT DHPIYNAAQEFIGNMHYPGHWITTEDKNTYGIKDEGFSFLAVDGKMYKYNVLGKLNPCE
FT VVPPHPNVIPWLEEKTLTMVHWDVHKHIATGPRNALVSCFLQGLVQDQSRVQSVELMGK
FT DSSPEQQAFFKRLSLSERIYLRLCQIRIDAVKKEQLSGPSRGTLDILKDCMAKSKAKLV
FT ENYSLLLTLVAVLVLIATAYSLISTLVGLAGCTSFAGGLVSMKQVSNASMPCSEPRLED
FT RYAARNRFVSRISRARGDGPAKGQGEHEELVTELYYYFDGVKRLVSCCWFKGRSLLMTR
FT HQALAIPVGNEVQVIYADGTDRKLVWPGKQEDGTCKGYIEFPENELVVFEHARLLTMPI
FT KYEKYFVDDPDRQISPNVAVKCCVARLEEGLPQFHFWNKYATARSDVHTVVDEGGSAVY
FT QNKIRRHIIYAHEAKRNDCGAIAVAEIQRTPKVIAMLVSGSGNITYSSVIPNYSSSFVR
FT GDVPYVPEDGIKTNGYRKVGYLMRKDAPHVPSKTAFMRVPDEICFPYPNPKQPAILSDE
FT DERLKGTIHEGYTPIRDGMRKFAEPMRLLDEKLLDEVAGDMVHTWFEVGEFLEDVPLNV
FT AINGDVDEEYFDPMAMDTSEGYPEVLQRKAGEKGKARFFIGEPGSREFVPGCGPEKAYL
FT SLEEECKMRVPSLISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLL
FT MKKRSYLPCQVGINPYSREWTDLYHRLAEMSDVGYNCDYKGFDGLITEQILATVATMIN
FT AGYRNPVSNQQRSNLLLAISGRLSICGNQVYETEAGIPSGCALTVVINSIFNELLMRYC
FT FKKIVPPIYRECFDRCVVLITYGDDNVFTVAQSIMESFTGDALKAEMATLGVTITDGKD
FT KSLATIPARPLLELEFLKRGFKKGDGGMIYAPLEKLSIMSSLVYIRSDGSDMLQKLVDN
FT VNSALVELFLHQDREYLESVRNFYLEKLPPGSYKELTTWYQAQSFHESQLCGESNWKPQ
FT GLIEISHGAGFASFVQQDGTELERHDICPGLAISGARYIAKSEEILLSLSSLLPGDVNV
FT HKLDLKCGDGIGRLPSKASVLAQRKPGIVMRLCKQALNEKKTLVIRDERPYIGGWAMAC
FT ICGESFGFSIRDTLALYANLLGPNRKNGLAGYFSNFESPVHVKKVHAITNGEEGAAELK
FT EVFTFCEPRIVAASFGETRKEMLAHPPESFPNVVLVGGISFPKEGGEPGALYSHTDIVM
FT SKKTKGVYVSEAILKCCLRCPGVTTKTVLQTSTIGSSLSKAHLKSLRQLQTHQCVRR"
XX
SQ Sequence 7385 BP; 1978 A; 1458 C; 1844 G; 2105 T; 0 other;
gq369527 Length: 7385 01-AUG-2012 Type: N Check: 1883 ..
1 atgaaaaaat ttctgtgagt tctatattaa aggcgatccc ctttaatctc
51 ataatcaaga gtttaagaaa ctcaaatttt catagtcaat ccgttaagag
101 cggaaacaaa gccaaaccgt taagagcggt actaaaagaa gagtttaaga
151 aactcattgc tttatttttc atttcattta cgctgtattt gtttagtttt
201 tgttttgttt aattaaagct ttcgccacga tgtggcaaat ttctgaaggc
251 tcccagtgct gttgcactgg gaagtcctgg tctaatgccg aggccaaaga
301 ggctcggtat gtctgcgatt gtttatacaa ttgcaggctt gtcaaagttg
351 aggtagcgcc tcagcctccg aagagtagga tagcgcctgc tcaacaaaag
401 aaggagagga tagcgcctct tcaaaactcg aatggtagga tggcgcctac
451 cacccccaaa tccaaaaggg cttccgtgcc cgacgcacct ttggttaaac
501 agaggtgtga tgttgttgtg agggttggcc cgccggctaa cctagagttg
551 gtataccctg ccttagtgca ggaagaggtg gcaaccccac ctactgaaaa
601 ggtcctgcag cctaccacaa aggctgatgt tagggtgcca gtttgctgtg
651 cgcctaaatg gatggtggct atccccaagc caccggttaa aactgctccc
701 agagtggagc aaacacagtt ccctaaggga gctgtgtgtt ataacggcac
751 caactttttg gatgccgcgg ggaaagtcgt cctatctgag ggcgcaaaga
801 ggattctcaa gggaatccgc gttgctaagc agcaacgtca aagggctgca
851 cgtagatctg ctgcgtgcaa gaaagttcgc aaggccaggg ctctggcttt
901 gtataagcgc ttgtctgaag agcgcacctt tcaggagctg cctggaggat
951 ttgcgggtga aattcctgct ggtttcttta gctacggtaa aaccgtagct
1001 tctcccattg ccacccctaa aaaggtggtt tccaaaagaa agagggtgtc
1051 aaagccctct actattgctg ttccagtgca ggacttttcc tgcattgatg
1101 ccttcgattg gggggagaaa tccttcccaa atgaggaagc catcgaggac
1151 gattgggtcc ttgtggaaaa acctgttttg aaaaggcagg ctgcacactc
1201 tgtgcagggg agggcgactg aagcccttac aagatttgcc gcttcaagcg
1251 gctttacaac aaaagcccac caaaaggtgg aggagctagc tgcctctggc
1301 gcagctggcc acttgattgc aggagagttt gcagagctct gcctgagatc
1351 tttggtgtac aatgatgcac ctaccttatc tgcctctatt gaagagcttg
1401 cttgtgagca agattttaaa gatgctattg agctcttcaa tattgaactt
1451 gctgagttgc caactgattc caccacctgt ggacggttta atgactgggc
1501 ttctgctgcc aaaactatgg cgaaaggaac tggttcttta gttggcgatt
1551 tagctcgctt ggctggggct ggtcttgtca ttacatttga caaggccatt
1601 gaatatttac aggaaaaggc attgacactt tgccaaaaag tgttcaatgc
1651 caccatggcc ccctatgtta gccacttgag tgaagcttcc gacattatta
1701 agaaaatttg gaagaagctc agtgaatgga tggaaagctt aaagggtaaa
1751 gctggactgg ccttggaggt gcttgcacac catgccatct ttgctcttgg
1801 agctattgtt gtgggaggag ttgttgtcct tgttgagaaa gtgctagtag
1851 ctaccaaagt tatccccact tgtggaattg tgctaggtgc tttcttaact
1901 ctcttctttg ccagtcttgg attgacggct cttgagtgca ctgctgatga
1951 aattttcaaa atgcaccaat gttgtaaagg tgctatctac agcatgtact
2001 ctgttaagga gcctgtgtgt gaaggagaag gggactccac gacaaaagga
2051 gttttacagg ggcttgacaa tgctatatct gccctgacga gagttgggca
2101 aagtatgatt agtttcaaac ttggaagctt ttcatattat gccaagattg
2151 cacaagggtt tgatcaactt gctcgtggaa agagagcaat aggtgaactt
2201 actagttggc tcatcgatct tgttggaagt gtttattcta aagtctctgg
2251 acaagagagc actttttttg atgagttatc tactatagtt tgtcttgatg
2301 tcagatcgtg gctgcttaaa agtaagcgcg tgagactgca agttgaaaca
2351 atggccattg gggatagaat aacgcttgat actatctcca aactactgga
2401 agaaggccat aaaatccttg tcactgctgc gggtgtgccc aggaaaacct
2451 ctgctgattt tacaatgtgc atcaaagaag aggtttccaa gctggaagag
2501 gtacaccaaa gaactgcctg cgccggcata aatgaaggta tgcgccagtt
2551 tcctttctgg gtatacattt ttggcgcttc acagtctggg aagactacca
2601 ttgctaattc tgtcatcatt ccctctttgt tagaggagat gaatcttccc
2651 aagacttcag tatactccag gcccaaaaca gggggttttt ggagcggata
2701 tgctagacag gcgtgtgtca aagttgatga tttttatgct attgagcaaa
2751 cgcccagttt agcttcttct atgatagatg tggtgaattc tgaaccatat
2801 ccattggaca tggcctacct gcatgaaaag ggcatgtcca tggactcacc
2851 acttgtcgtg acgactgcaa atactgtgaa gcctcctacc aatgctggta
2901 ttactgatga ggcttctttc tttaatcgtc gcgccgctgt tatagaagtg
2951 aggagaaagg acaataccca ctttacaccc cgtgcatatg ataattgcat
3001 tgaagtgagg ttcctgcaca ataagtgtgc atacgttaat tctgagggtg
3051 ttccccaggg gcctgctgtc aataccccca tggaagaagg atgggtttct
3101 cccagcgaag ctgttgctac gctgaaaaat ttattgggag agcacgtcct
3151 tgctgaagaa gaaaagctgc tggattaccg tgagaggatt ggtaatgacc
3201 atcctattta taatgcagct caagagttca taggtaacat gcattatcca
3251 ggtcactgga taacaactga agacaaaaat acctatggaa tcaaggatga
3301 ggggttttcc ttccttgctg tggacggaaa aatgtacaag tataacgtgc
3351 ttggaaaatt aaacccctgt gaagttgttc caccacatcc caatgttatc
3401 ccttggttag aagagaaaac attaacaatg gtgcattggg atgtgcataa
3451 acatatagcc actggtccca ggaatgcttt agtttcctgc tttttgcagg
3501 gtcttgtgca ggaccagagt cgtgtccaga gtgtggagct catgggcaag
3551 gacagctcac ctgaacagca ggcgtttttt aagagattga gcctttctga
3601 gagaatatat ctcaggttgt gccaaattcg catagatgct gttaagaagg
3651 agcaactgag tgggccatct aggggaaccc tagatatttt gaaggactgt
3701 atggccaaga gtaaggctaa attagtagaa aattattctc tacttcttac
3751 tctggttgca gttcttgtgt taattgctac ggcctattca ctgatctcca
3801 ctctggtggg tctagccggg tgtacaagct ttgctggagg tttggtatca
3851 atgaagcaag tttctaatgc ttccatgcca tgctcagaac cccggttaga
3901 agaccgatat gcagctagaa accgttttgt gtcgcggatt tctagagcta
3951 gaggagacgg ccctgctaag ggccagggag aacacgaaga actagtcact
4001 gaactctatt attattttga tggggtgaag aggctcgttt cttgttgctg
4051 gtttaaaggg cgctcccttt tgatgactag acaccaagcg ttggccattc
4101 ctgtcggaaa tgaagtgcaa gttatttatg ctgacggcac tgataggaaa
4151 ctcgtatggc caggaaaaca ggaagacgga acctgcaagg gatacatcga
4201 attcccagag aatgaacttg ttgtatttga acatgctcgt ctgttgacga
4251 tgccaatcaa atatgaaaag tattttgttg atgatcccga ccgtcaaatt
4301 tctcccaatg tcgctgtcaa atgctgcgtg gcacgacttg aggaaggact
4351 cccccagttt catttctgga ataaatatgc cactgccaga agtgatgtgc
4401 ataccgttgt tgatgaaggg gggagtgcag tctaccagaa caaaattagg
4451 aggcatatta tatatgccca tgaagctaaa agaaatgatt gcggggctat
4501 tgctgttgct gaaatacagc gtactcccaa ggtcattgca atgctggttt
4551 ctggttctgg aaatataacc tattcttccg tgataccgaa ttacagctct
4601 tcttttgtca gaggagatgt accatatgtg ccggaagatg ggattaagac
4651 aaatgggtat aggaaagtag ggtatctgat gcgaaaagat gccccgcacg
4701 ttccaagcaa aacggcattc atgagagtgc cagatgagat ttgctttccc
4751 tacccaaatc caaagcagcc tgccatcctg agtgatgaag atgaacgttt
4801 aaagggtaca atccatgaag gatatactcc aattcgggat ggcatgagga
4851 agtttgctga accaatgcgc ctgcttgatg aaaaattgtt ggatgaagtt
4901 gcaggtgaca tggttcacac atggtttgaa gttggggaat ttcttgaaga
4951 tgtccctcta aatgttgcca ttaatggtga tgtggatgag gagtattttg
5001 accccatggc catggatacg tctgagggat atccagaagt ccttcagagg
5051 aaagcaggag aaaaagggaa agcccgcttt ttcattgggg aacctgggtc
5101 acgagaattt gtgcctgggt gcggaccaga aaaggcttat ttgagtctag
5151 aagaggaatg caaaatgcgt gtcccttctc ttataagtat cgaaacccca
5201 aaggatgaaa ggcttaagag atctaaaatt gagactccag gtacgagatt
5251 attttctgtg ctacctttag catataatct tctactgaga gttaaatttt
5301 tgtccttttc tcgcctgtta atgaagaaaa gaagctactt gccttgtcaa
5351 gtaggtatca acccctatag tcgtgaatgg actgatttat accaccgttt
5401 ggcagaaatg tcagatgtgg gttataattg cgactataaa gggtttgatg
5451 gcttgatcac ggagcaaata ttggctaccg ttgcaacaat gataaatgcg
5501 ggataccgca atcctgtgag caaccaacag cggtccaatc ttttgctagc
5551 tattagtggt cggctatcaa tctgtggaaa ccaggtctat gaaacagagg
5601 ctggtattcc ttctggttgc gctttaacag ttgttattaa ttccatattc
5651 aatgaactgt tgatgcgcta ctgtttcaag aaaattgtcc ctcccattta
5701 ccgggaatgc tttgatagat gtgttgtttt aatcacctat ggtgatgata
5751 acgtttttac tgtagcacag tctattatgg aaagctttac tggtgacgct
5801 cttaaagccg agatggctac tttgggagtg acgattactg atggcaagga
5851 taagagtctt gccacaattc cagcacgccc tctgctagaa ttggaatttt
5901 tgaagagagg gttcaagaaa ggagatggag gcatgatcta cgctcccctg
5951 gaaaaactgt ccatcatgag ttcactcgtg tatatccgta gtgatgggtc
6001 agatatgttg caaaaactag tcgacaatgt aaatagtgct ttggttgaat
6051 tgtttttgca tcaagatagg gagtatctgg aaagtgtccg aaatttctat
6101 cttgagaagc ttcctcctgg gtcttataaa gaactgacta cgtggtatca
6151 ggctcagtcc ttccatgaga gtcaactttg cggggaaagc aactggaaac
6201 cccagggatt gattgaaatt agtcatggtg ctggttttgc tagttttgtc
6251 caacaggatg gaacagagtt agaacgccat gatatttgcc ctgggctggc
6301 tatatctgga gctaggtata ttgccaaaag tgaagagata ttgttgtctc
6351 ttagctccct tttgccgggc gatgtcaatg tgcacaagct tgaccttaaa
6401 tgtggggatg gtattggccg tcttccctct aaagctagtg tattggcaca
6451 acggaaaccc ggaatcgtaa tgaggttatg caagcaggcc cttaatgaga
6501 aaaagactct tgtcattcgt gacgagagac cttatattgg aggttgggct
6551 atggcttgca tatgtggaga gagttttggt ttttccatta gggatacctt
6601 ggcattatat gccaatctgt tgggacctaa taggaaaaat gggctggcag
6651 gatatttctc aaattttgaa agtccagttc atgtgaagaa agttcacgcc
6701 atcactaacg gagaagaagg agctgctgag ttgaaagaag tgttcacttt
6751 ttgtgagcca agaattgttg cggcttcctt tggcgaaaca agaaaggaaa
6801 tgctggctca cccacctgag tcatttccta atgttgtatt agttggggga
6851 attagtttcc caaaagaagg tggggaacct ggagctttat actcccacac
6901 tgacatagtt atgtccaaga aaacaaaggg cgtgtatgtt agtgaggcca
6951 ttttgaagtg ttgtctaaga tgtcctggtg ttactaccaa gaccgttctt
7001 cagacttcta ccattgggag tagtctttcc aaggctcatt tgaagagttt
7051 gcgccaatta caaacgcacc aatgtgtgcg taggtgactc ttcatttaat
7101 taggcaagcc ggtagacttc gtgtgctgct accatggaac tacatggtct
7151 cgtatggtac tgggataacc atcaataaat aacccagttt tcgcactgct
7201 catgctcttg tgggtgcgtc atattcagag caatttgtgt tatatttata
7251 tttagcttgt ttactacttc tgtgtgttta atttcatgca tttagtggcg
7301 acagtgtgtt gtttgtcctt tggacacact tgccttgttg gacgcaaaaa
7351 gattttattt tctttttact gcttttgtag atttt