Sequence of DPV Arabis mosaic virus
Arabis mosaic virus isolate ba segment RNA2-V, complete sequence.
ACC No: GQ369530
Dated: 2012-08-01 | Length: 3812 | CRC: 550985427
ID GQ369530; SV 1; linear; genomic RNA; STD; VRL; 3812 BP.
XX
AC GQ369530;
XX
DT 01-AUG-2012 (Rel. 113, Created)
DT 01-AUG-2012 (Rel. 113, Last updated, Version 1)
XX
DE Arabis mosaic virus isolate ba segment RNA2-V, complete sequence.
XX
KW .
XX
OS Arabis mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Secoviridae; Comovirinae; Nepovirus; Subgroup A.
XX
RN [1]
RP 1-3812
RA Marmonier A., Vigne E., Komar V., Demangeat G., Besse S., Gugerli P.,
RA Lemaire O.;
RT "Comparisons of genomic and pathological features among barley and
RT grapevine infecting-isolates of Arabis mosaic virus";
RL Unpublished.
XX
RN [2]
RP 1-3812
RA Marmonier A., Vigne E., Lemaire O.;
RT ;
RL Submitted (09-JUL-2009) to the INSDC.
RL UMR 1131, INRA, 28 rue de Herrlisheim, Colmar, 68 68000, France
XX
CC GenBank Accession Numbers GQ369526-GQ369530 represent sequences
CC from the 5 segments of Arabis mosaic virus isolate ba.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3812
FT /organism="Arabis mosaic virus"
FT /segment="RNA2-V"
FT /host="winter barley cultivar Express"
FT /isolate="ba"
FT /mol_type="genomic RNA"
FT /country="Switzerland"
FT /collection_date="1991"
FT /note="identical sequence found in winter barley cultivar
FT Mannitou"
FT /db_xref="taxon:12271"
FT CDS 261. .3617
FT /codon_start=1
FT /product="polyprotein P2-V"
FT /protein_id="ADJ39333.1"
FT /translation="MGKFYYSNRRLACYAQATNRHLGGSFEQWLQCMEDSAFRAEVKAR
FT VQSEREEVRVKRLFSYPVGRGPAEDPRGVNWAYICLGTTAHWAGVPGDMIAPVEPVEVP
FT KVVVPPVKVIPSPPPMPRPYFRSIGAFAPTRSGFIRATVERLTREREESRAAALFAELP
FT LEYPQGAPLVVPRGFAAMRWNYHATWRRWYDTSDERALRVHPGGPALPPPPPPPPIQKP
FT PSFEERLQAALQRQSCARAFALETSLGLNMAWVGTATVPGISVCCADGRTTGGQTIAQE
FT ADPINHRVASNTAPGRAQWISERRSALRRKEQANSLQGLAAQTDMTFEQARNAYLGAAD
FT MIEQGLPLLPPLRNAYAPRGLWRGPSTRANYTLDFRLNGIPTGQNTLEILYNPVADEEM
FT DDYRDRGMSAVVIDALEIAINPFGMPGNPTDLTVVATYGHERNMERAFIGSSSTFLGNG
FT LARAIFFPGLQYSQEEPRRESLIRLYVASTNATVDADSILAAISVGTLRQHIGSLHNRT
FT VASSVHAAQVQGTTLRATMMGNAVVVSPEGSLVTGTPEANVQIGGGSSMRMVGPLAWEN
FT VEEPGQTFTIRNRSRSMRVDRNADVGIALPRMSTTTRGLAGRGSVQVPKDCQAGKYLKT
FT LDLRDMVSGFSGIQYEKWITAGLVMPDFKVVVRYPANAFTGITWVMSFDAYNRITSSIS
FT TTASPAYTLSVPHWLLHHKNGTTSCDIDYGELCGHAMWFNATTFESPKLHFTCLTGNNK
FT ELAADWEFVVELYAEFEAAKTFLGRPNFIYSADAFNGSFKFLTIPPLEYDLSTTSAYKS
FT VSLLLGQTLVDGTHKVYNYNNTLLSYYLGIGGVVKGKVHICSPCTYGIVLRVVSEWNGV
FT TNNWNQLFKYPGCYIDEDGRFEIEIRSPYHRTPLRLLDGQAASSFTSTLNFYAISGPIA
FT PSGETAKMPVVVQIEEVALPDLSVPTFPNDYFLWVDFSAFTVDTEEYVIGSRFFDISST
FT TSTVALGDNPFAHMIACHGLHHGILDLKLMWDLEGEFGKSSGGVTITKLCGDKATGMDG
FT ASRVCALQTMGCETELYIGNFAGANPNTALSLYSRWLAIKLDKAKSMKMLRVLCKPRGN
FT FEFYGRTCFKV"
XX
SQ Sequence 3812 BP; 910 A; 821 C; 955 G; 1126 T; 0 other;
gq369530 Length: 3812 01-AUG-2012 Type: N Check: 9470 ..
1 atgaaaaatt ttgtggagtt ttcatataaa cgcaatccac aaccctttca
51 accaagagtt taagaaactc aaaattgttc acagccaatc cgttaagagc
101 ggaataaaag tcaaaccgtt aagagcggta ccaaagcgaa gagtttaaga
151 aactcatcat tgccttcttt ttctttctta cttacgtgct ttatttattt
201 agcgtttgtg tagtctgctt ttttggagga gcgttttgtt tcgttttctt
251 ttctgccctt atgggcaagt tttactacag taacaggcgt ctagcctgtt
301 acgcacaagc tacgaaccgt catctgggcg gttctttcga acaatggctc
351 caatgtatgg aggactcagc ctttagggct gaggttaaag cccgtgtcca
401 atcagagcgg gaggaagtcc gtgtcaagcg gcttttttcc tatccagttg
451 gtcgtgggcc agctgaagac ccccgtgggg tcaactgggc atacatatgt
501 ctggggacta ctgcccattg ggctggagtt cccggggaca tgatagcccc
551 agttgaacct gtggaggttc cgaaggtggt ggtgccacct gtgaaggtta
601 ttccttcacc gccccccatg ccaaggcctt actttaggtc aattggggcg
651 ttcgcaccaa ccaggtccgg gtttatacgg gccactgtgg aaagacttac
701 ccgggaacgg gaagagtcaa gagctgcggc actctttgcc gaattgccgt
751 tggagtaccc acaaggtgct cccttggtgg tccctcgtgg cttcgcggcc
801 atgaggtgga actatcatgc cacctggagg cggtggtatg acactagtga
851 tgagcgcgct ttgcgtgttc atcctggtgg tcctgctttg cctccaccac
901 cccccccccc cccaatccaa aaaccaccct cttttgagga gaggttgcag
951 gctgctcttc aaaggcagtc ctgtgctagg gctttcgccc tggaaacctc
1001 gctgggcctt aatatggcct gggtgggaac ggctaccgtc cctggcattt
1051 ctgtatgctg tgcagatggt aggactaccg gagggcaaac cattgcccaa
1101 gaagctgacc ctattaatca tagggtcgcc tcaaacacag cccccggtag
1151 ggcacaatgg atctcggagc gccgcagtgc tttgagaaga aaagaacagg
1201 ctaatagcct gcagggtctt gctgctcaaa ctgatatgac atttgagcag
1251 gccaggaatg cgtatcttgg tgctgctgat atgatagagc aaggcctacc
1301 gttgttgcct ccactgagaa atgcttatgc acctcgtggt ctatggaggg
1351 gaccttccac cagagccaat tacactttgg atttcaggct caatggaatt
1401 cccacgggac aaaatacttt agaaatattg tataatcccg tggcggacga
1451 ggaaatggat gactaccgtg acaggggtat gtcagcagtc gtgattgatg
1501 cgctggaaat tgctattaat ccttttggaa tgccaggcaa tccgactgat
1551 cttactgttg tagcaacata tgggcatgag cgtaatatgg agcgtgcctt
1601 tattggctct tcgtcgacct ttcttggaaa tggtctggcg agagctattt
1651 tcttccctgg cttgcaatat agtcaggagg aacccaggcg cgaatcactt
1701 attcgcctgt atgttgcttc taccaatgcc actgttgatg ctgattctat
1751 attggcagcc attagtgtgg gcactctgcg ccaacacatt ggttcgctac
1801 ataatagaac agtggcaagt tctgtgcatg ctgctcaggt gcagggcact
1851 actttgaggg ctactatgat gggtaatgcc gttgtagtct cccctgaagg
1901 aagtcttgtt accggaaccc ctgaagccaa tgtccaaatt ggaggaggtt
1951 ctagtatgcg aatggttggt cccctggcat gggaaaatgt tgaagagcca
2001 ggtcagacct ttactataag aaaccgctcc cggtctatgc gagtagatcg
2051 gaatgctgat gttggaattg ctcttcctcg gatgagtact acaacgcggg
2101 gtcttgctgg tagaggttct gttcaggtgc ctaaagattg ccaggcaggg
2151 aaatacttga aaacccttga tttaagagat atggttagtg ggttttctgg
2201 tattcagtat gaaaagtgga tcactgctgg acttgttatg ccagatttta
2251 aagtagtggt tcgctatccg gccaatgcct ttacaggtat tacgtgggtt
2301 atgagctttg atgcctataa tcggattact agcagtattt ctactactgc
2351 tagtcctgcg tatactctgt ctgtccctca ttggcttttg catcataaaa
2401 acgggaccac ctcatgtgat attgactatg gggagctctg tggccatgct
2451 atgtggttta atgccactac atttgagagc cccaaactcc atttcacatg
2501 cctcactggg aataacaaag aacttgctgc agattgggag tttgtagtgg
2551 agttatatgc tgagtttgag gcagcaaaaa cttttcttgg gaggcccaac
2601 tttatttata gcgctgatgc ttttaatggg tctttcaagt ttttgacaat
2651 tcccccgctg gaatatgacc taagtactac cagtgcctat aagagcgtat
2701 cccttctttt gggtcaaact cttgttgatg gaactcataa ggtgtataat
2751 tacaataata cacttttgag ttactatctt ggtattggtg gtgtggtcaa
2801 gggcaaagtg catatatgta gcccttgcac ttatggcata gtcctgagag
2851 ttgttagtga atggaacggg gtcactaaca actggaatca actgtttaaa
2901 taccccgggt gttacatcga tgaggatggg cgatttgaaa ttgaaatacg
2951 ttccccatat catcgaactc cactgcgctt acttgatgga caggcggcga
3001 gctcatttac gagtacgctg aatttttatg ccatctctgg gccaatagcc
3051 ccaagtggag aaactgctaa gatgccagtg gtcgtgcaga ttgaagaagt
3101 tgcacttcct gatctttcag ttccaacctt ccctaatgat tatttcctat
3151 gggttgattt ttcagcgttc actgtggata ctgaagaata tgtaataggg
3201 tcgaggtttt ttgatatttc ctcaactact agtactgtag ccctcggaga
3251 taatcctttt gcccacatga tagcttgtca tggactccat catggaatcc
3301 ttgatcttaa gttaatgtgg gatttggaag gtgagtttgg aaagagttct
3351 ggtggtgtta ctatcacaaa actttgtggt gataaggcta ctggcatgga
3401 tggtgcttct cgtgtgtgtg ctttgcaaac catggggtgc gaaactgaac
3451 tgtacattgg gaattttgct ggcgcaaacc ccaatacggc gctttccttg
3501 tacagtcgtt ggcttgccat taaattagac aaagcaaaga gtatgaaaat
3551 gctcagagtt ttgtgcaagc ccagaggaaa ctttgaattc tacggaagaa
3601 cgtgcttcaa agtttagttt cctcatgata gtcttgggaa tctgacttta
3651 aaagacccat ttgtgttata tttatattta gcttgtttac tgcttttgtg
3701 tgtttaattt catgcttata gtggcgacag tgtgttgttt gtcctttgga
3751 cacacttgcc ttgttggacg caaaaagatt ttattttctt tttactgctt
3801 ttgtaaattt at